Containers and Workflow Pipelines for reproducible and automated data analysis
Date: 11 - 12 May 2020
Containers
Learn the concept of and the difference between Docker & Singularity containers
Write a Docker recipe, build and run a Docker image and containers
Pull and push Docker container to / from Docker hub
Docker files and layers; Docker cashing
Working with volumes
Pull Docker containers as a Singularity image
Pipelines
Understand Nextflow's basic concepts: processes, channels, ...
Write and run a Nextflow pipeline (using a Singularity containers)
Organizer: VIB Bioinformatics Core
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