Containers and Workflow Pipelines for reproducible and automated data analysis
Date: 20 - 27 May 2021
Containers
Learn the concept of and the difference between Docker & Singularity containers
Write a Docker recipe, build and run a Docker image and containers
Pull and push Docker container to / from Docker hub
Docker files and layers; Docker cashing
Working with volumes
Pull Docker containers as a Singularity image
Pipelines
Understand Nextflow's basic concepts: channels, processes, modules, workflows, etc.
Write and run a Nextflow pipeline
Write and modify config files for storing parameters related to computing hardware as well as pipeline dependent parameters
This workshop will be organised online on Thursday 20 and 27 May 2021.
Organizer: VIB Bioinformatics Core
External resources:Activity log