Date: 20 - 27 May 2021

Containers

Learn the concept of and the difference between Docker & Singularity containers 
Write a Docker recipe, build and run a Docker image and containers
Pull and push Docker container to / from Docker hub
Docker files and layers; Docker cashing
Working with volumes
Pull Docker containers as a Singularity image

Pipelines

Understand Nextflow's basic concepts: channels, processes, modules, workflows, etc. 
Write and run a Nextflow pipeline 
Write and modify config files for storing parameters related to computing hardware as well as pipeline dependent parameters

This workshop will be organised online on Thursday 20 and 27 May 2021. 

 

Organizer: VIB Bioinformatics Core

External resources:

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