H3ABioNet 2018 Genotyping Chip Data Analysis and GWAS lecture series - Lecture 3
Genotype calling from Illumina files
Date: 27 August 2018 @ 15:00 - 16:00
Timezone: Central African Time (CAT)
Genotype calling from Illumina files
The third of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce genotyping SNP array chips with particular emphasis on the H3Africa genotype chip. The lecture will cover common file formats when obtaining genotyping chip data from a service provider such as Illumina and software used for genotype calling. This lecture will also cover genotype calling, sample and probe quality control, probe viewing and exporting of data using GenomeStudio. Converting the data to PLINK format and some tips on troubleshooting and common pitfalls will be discussed.
Contact: info@h3abionet.org
Keywords: Genotype calling, H3ABioNet, Genotype calling, Genome Studio, H3Africa genotyping array, African populations, Array processing, Illumina arrays, File formats, Annotations, Non-polymorphic, Top/Bottom annotation, Genotype array probes, Intensities, Convert to PLINK format , Bioinformatics, Genome Wide Association Studies
Organizer: H3ABioNet
Host institutions: H3ABioNet
Target audience: Anyone intersted in GWAS and using the H3Africa genotyping chip
Capacity: 150
Event types:
- Workshops and courses
Sponsors: H3ABioNet
Scientific topics: Computational biology, Genomics, Genotyping experiment, Bioinformatics, Population genomics
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