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CSC - IT Center for Science Ltd. is a non-profit, state-owned company administered by the Finnish Ministry of Education and Culture. CSC maintains and develops the state-owned centralised IT infrastructure and uses it to provide nationwide IT services for research, libraries, archives, museums and culture as well as information, education and research management.
CSC has the task of promoting the operational framework of Finnish research, education, culture and administration. As a non-profit, government organisation, it is our duty to foster exemplary transparency, honesty and responsibility. Trust is the foundation of CSC's success. Customers, suppliers, owners and personnel alike must feel certain that we will fulfil our commitments and promises in an ethically sustainable manner.
CSC has offices in Espoo's Keilaniemi and in the Renforsin Ranta business park in Kajaani.

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Date: 13 - 15 September 2017

This workshop will focus on the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the "Best Practices" developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset.

Venue: The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo.

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Variant analysis with GATK