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Workshops and courses
Methods in bioimage analysis
23 March 2022 @ 09:00 - 17:00
Online
Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics Tissue biology Cell-cell interactions Cell signalling cell-cell communication cell-cell interaction single-cells Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Plant research Drug targets Machine learning Mathematical modelling plant science plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal -
Workshops and courses
Methods in genomic variant calling
30 March 2022 @ 09:00 - 17:00
Online
Data integration Advances in spatial omics RNA FISH Spatial multi-omics BioImage Archive Single cell Spatial transcriptomics Tissue biology Cell-cell interactions Cell signalling cell-cell communication cell-cell interaction single-cells Scientific communication Scientific presentation Data presentation Research presentation Protein Data Bank in Europe Ensembl UniProt: The Universal Protein Resource AlphaFold Database Proteins (proteins) DNA & RNA (dna-rna) Variant prediction Fermentation Microbial ecosystems webinar Antimicrobial resistance BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Plant research Drug targets Machine learning Mathematical modelling plant science plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR -
Workshops and courses
An introduction to EMBL-EBI resources
21 September 2022
Online
Bioinformatics Fermentation Microbial ecosystems webinar UniProt: The Universal Protein Resource Proteins (proteins) BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniFIRE Protein annotation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome Protein Data Bank in Europe genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy Beginner -
Workshops and courses
A guided tour of the new and improved UniProt website
22 September 2022
Online
Proteins MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest Cross domain (cross-domain) ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Complex Portal Proteins (proteins) macromolecular assembly InterPro Europe PubMed Central Literature (literature) Open access UniProt: The Universal Protein Resource Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Open Targets Platform Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics API Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniRule UniFIRE ARBA Protein annotation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint Protein function HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome Protein Data Bank in Europe genes Introductory GDPR Data security Expression Atlas Programmatic access UniParc UniRef Pfam protein sequence search Domain architecture Protein taxonomy -
Workshops and courses
Programmatic access to UniProt using Python
29 September 2022
Online
Proteins UniProt: The Universal Protein Resource Proteins (proteins) MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest Cross domain (cross-domain) ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Open Targets Platform Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniRule UniFIRE ARBA Protein annotation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome Protein Data Bank in Europe genes Introductory GDPR Data security Expression Atlas UniParc UniRef -
Workshops and courses
Uncovering protein function with UniProt
17 November 2022
Online
Function analysis MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest Cross domain (cross-domain) ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal UniProt: The Universal Protein Resource Programmatic access API Python Complex Portal Proteins (proteins) macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Open Targets Platform Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniRule UniFIRE ARBA Protein annotation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint Protein function -
Workshops and courses
Automated annotation in UniProt
8 December 2022
Online
Fermentation Microbial ecosystems webinar UniProt: The Universal Protein Resource Proteins (proteins) BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniFIRE Protein annotation -
Workshops and courses
Exploring plant genes and genomes with Ensembl
1 March 2023 @ 09:00 - 17:00
Online
Genome feature comparison Genome visualisation Plant biology Ensembl Genomes Plant webinar series Plant research plants -
Workshops and courses
UniProt for proteomics scientists
2 March 2023
Online
Fermentation Microbial ecosystems webinar Ensembl DNA & RNA (dna-rna) UniProt: The Universal Protein Resource Proteins (proteins) BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search -
Workshops and courses
Single-cell and spatial omics technologies in plant science
22 March 2023 @ 09:00 - 17:00
Online
Omics Epigenomics Transcriptomics plant-microbe interactions Plant webinar series Spatial transcriptomics Plant research
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