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Workshops and courses
Genome3D annotations in InterPro
11 September 2019 @ 09:00 - 17:00
Online
Protein structure Protein structural motifs and surfaces Protein structure analysis InterPro Proteins (proteins) Genome3D Genome annotations Protein domain prediction -
Workshops and courses
PDBe Graph Database: A Neo4J-driven integrative knowledge graph for structural data
27 May 2020 @ 09:00 - 17:00
Online
Small molecules Protein structure Structural biology Protein Data Bank in Europe Proteins (proteins) PDBe Graph database PDBe-KB API Programmatic access -
Workshops and courses
Introduction to PDBe programmatic access
15 September 2020 @ 09:00 - 17:00
Online
Protein sequence analysis Protein structure Protein Data Bank in Europe Programmatic access API PDBe -
Workshops and courses
Data visualisation at PDBe
20 October 2020 @ 09:00 - 17:00
Online
Protein structure analysis Protein Data Bank in Europe Proteins (proteins) Programmatic access API PDBe Data visualisation -
Workshops and courses
Sequence analysis tools in UniProt: BLAST and Align
26 November 2020
Online
BLAST results Proteins Protein structure Fermentation Microbial ecosystems webinar UniProt: The Universal Protein Resource Proteins (proteins) BLAST Open Targets Platform Cross domain (cross-domain) Chemical biology (chemical-biology) Drug discovery Drug target identification UniRule ARBA Automated annotation MetaboLights: Metabolomics repository and reference database Chemical Entities of Biological Interest ChEBI Metabolites Molecular building blocks of life Human Cell Atlas Data Coordination Platform Single-cell transcriptomics HCA data portal Programmatic access API Python Complex Portal macromolecular assembly InterPro Boolean modelling Europe PubMed Central Literature (literature) Open access Protein Data Bank in Europe - Knowledge Base 3D structure AlphaFold Database DeepMind Artificial intelligence AI Structure prediction cancer Boolean Ensembl Genomes DNA & RNA (dna-rna) European Nucleotide Archive Data archive Raw sequencing data RNAcentral Non-coding RNA ncRNA GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association Proteomics Proteomes Peptide search plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome Protein Data Bank in Europe genes Introductory GDPR Data security Expression Atlas Pfam protein sequence search Domain architecture Protein taxonomy AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Bioactivity data Drug-like compounds BioStudies Database EBI Search Finding data World Sight Day Eye development Eye disease Open software Metadata Web Services Dbfetch Database fetch programmatic access Open Targets Protein structure prediction Colab notebooks RESTful API RESTful Web Services PDBe Ligand binding sites Protein families Protein functional analysis Protein sequences Data curation Biomolecular sequences Cytoscape PsyArXiv Psychology Bioactive data Drug-like molecules Biological studies Literature Neurodegenerative disorders Data sharing Molecular visualisation Molecular structures Electron density maps EBI BioSamples Database BioSamples Data Use Ontology DUO ELIXIR Ensembl Variant Effect Predictor Variant Effect Predictor VEP Variation data Annotation Macromolecular complexes UniProt Align UniProt BLAST Sequence analysis tools Multiple sequence alignments -
Workshops and courses
EMBL-EBI workshop: University of Pavia, 2021 (Virtual)
1 - 11 February 2021
Online
Genomics Transcriptomics Functional genomics Proteins Protein structure Molecular interactions, pathways and networks Metabolomics Ensembl Expression Atlas ArrayExpress Archive of Functional Genomics Data UniProt: The Universal Protein Resource Protein Data Bank in Europe IntAct Molecular Interaction Database Complex Portal Reactome pathways database Chemical Entities of Biological Interest MetaboLights: Metabolomics repository and reference database DNA & RNA (dna-rna) Gene expression (gene-expression) Proteins (proteins) Structures (structures) Systems (systems) Chemical biology (chemical-biology) -
Workshops and courses
Mol*: Improved molecular visualisation at PDBe
24 March 2021 @ 09:00 - 17:00
Online
Protein structure Visualisation Structure analysis Protein Data Bank in Europe Proteins (proteins) Molecular visualisation Molecular structures Electron density maps PDBe -
Workshops and courses
Curso Internacional: Estrategias bioinformáticas para el estudio de enfermedades tropicales desatendidas (ETDs)
21 - 25 June 2021
Online
Structure analysis Chemical biology Ligand-binding site prediction Simulation Protein structure Protein Data Bank in Europe Proteins (proteins) Structures (structures) Chemical biology (chemical-biology) neglected topical diseases NTDs small molecules -
Workshops and courses
A guide to analysing binding sites in protein structures
30 June 2021 @ 09:00 - 17:00
Online
Protein structure Ligand-binding site prediction Proteins Protein Data Bank in Europe Proteins (proteins) PDBe Ligand binding sites
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