Cytoscape stringApp exercises
Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases.
The exercises will teach you how to:
- retrieve networks for proteins or small-molecule compounds of interest
- retrieve networks for a disease or an arbitrary topics in PubMed
- layout and visually style the resulting networks
- import external data and map them onto a network
- perform enrichment analyses and visualize the results
- merge and compare networks
- select proteins by attributes
- identify functional modules through network clustering
Licence: Creative Commons Attribution 4.0 International
Target audience: Bioinformaticians, Biologists
Contributors: John "Scooter" Morris
Scientific topics: Bioinformatics, Molecular interactions, pathways and networks, Protein interactions, Proteomics, Data visualisation
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