Training materials
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e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
e-learning
Downstream Single-cell RNA analysis with RaceID
• beginnerSingle Cell work-in-progress -
e-learning
Creating Galaxy tools from Conda Through Deployment
• beginnerSoftware engineering Development in Galaxy
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