Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms15
    • Computer programming15
    • Data structures15
    • Programming languages15
    • Software development15
    • Software engineering15
    • Antimicrobial stewardship3
    • De novo genome sequencing3
    • Epidemiology3
    • Exomes3
    • Genome annotation3
    • Genome sequencing3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Public health3
    • Public health and epidemiology3
    • Synthetic genomics3
    • Viral genomics3
    • WGS3
    • Whole genome resequencing3
    • Whole genome sequencing3
    • Whole genomes3
    • AMR2
    • Antibiotic resistance (ABR)2
    • Antifungal resistance2
    • Antimicrobial resistance2
    • Antiprotozoal resistance2
    • Antiviral resistance2
    • Assembly2
    • Extensive drug resistance (XDR)2
    • Multidrug resistance2
    • Multiple drug resistance (MDR)2
    • Multiresistance2
    • Pandrug resistance (PDR)2
    • Sequence assembly2
    • Total drug resistance (TDR)2
    • Biological sequences1
    • Communicable disease1
    • Infectious disease1
    • Sequence analysis1
    • Sequence databases1
    • Transmissible disease1
    • Show N_FILTERS more
    • Tool
    • Galaxy15
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • SCANPY4
    • FastQC3
    • STAR3
    • Bandage2
    • QUAST2
    • SAMtools2
    • annotatemyids2
    • fastp2
    • Bakta1
    • Biopython1
    • Bowtie 21
    • Bwa-mem21
    • DropletUtils1
    • Falco1
    • Filtlong1
    • Flye1
    • JBrowse1
    • MultiQC1
    • NanoPlot1
    • Polypolish1
    • UMI-tools1
    • shovill1
    • staramr1
    • tbl2gff31
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training33
    • Show N_FILTERS more
    • Keyword
    • Foundations of Data Science15
    • Single Cell15
    • jupyter-notebook15
    • microgalaxy3
    • paper-replication3
    • transcriptomics3
    • 10x2
    • Assembly2
    • MIGHTS2
    • amr2
    • assembly2
    • bash2
    • data management2
    • illumina2
    • work-in-progress2
    • Genome Annotation1
    • SQL1
    • gmod1
    • jbrowse11
    • nanopore1
    • one-health1
    • plants1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner28
    • Intermediate5
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International33
    • Show N_FILTERS more
    • Target audience
    • Students33
    • Show N_FILTERS more
    • Author
    • Bazante Sanders
    • Mehmet Tekman
    • Helena Rasche113
    • SIB Swiss Institute of Bioinformatics104
    • Bérénice Batut90
    • Saskia Hiltemann54
    • Björn Grüning38
    • Anton Nekrutenko27
    • bebatut27
    • Anthony Bretaudeau26
    • bgruening25
    • Subina Mehta24
    • The Carpentries23
    • Wandrille Duchemin22
    • Yvan Le Bras22
    • Fotis E. Psomopoulos21
    • Michelle Brazas21
    • Simon Gladman21
    • Nicola Soranzo20
    • Nate Coraor19
    • Katarzyna Kamieniecka18
    • Krzysztof Poterlowicz18
    • Terri Attwood18
    • Wendi Bacon18
    • Marie Josse17
    • The Gulbenkian Training Programme in Bioinformatics17
    • Anne Fouilloux16
    • Maria Doyle14
    • Martin Morgan14
    • Donny Vrins13
    • Geert van Geest13
    • James Johnson13
    • Julia Jakiela13
    • Katherine Do13
    • Patricia Palagi13
    • Wolfgang Maier13
    • shiltemann13
    • Cristóbal Gallardo12
    • Egon Willighagen12
    • Simon Andrews12
    • Simon Bray12
    • nekrut12
    • Anup Kumar11
    • Celia van Gelder11
    • Delphine Lariviere11
    • Khaled Jum'ah11
    • Mathieu Bourgey11
    • Melanie Föll11
    • Pratik Jagtap11
    • Dave Clements10
    • Lucille Delisle10
    • Mijke Jetten10
    • Paul Yorke10
    • Pavankumar Videm10
    • Daniel Blankenberg9
    • David Wishart9
    • Jared Simpson9
    • John Chilton9
    • Marius van den Beek9
    • allegra.via Via9
    • Allegra Via8
    • Anika Erxleben8
    • Avans Hogeschool8
    • Boris Steipe8
    • Elisabeth Gasteiger8
    • Helen Brown8
    • Malachi Griffith8
    • Maria Levchenko8
    • Matthias Fahrner8
    • Paul Zierep8
    • Robin Engler8
    • Stéphanie Robin8
    • Timothy J. Griffin8
    • Alex Ostrovsky7
    • Alexander Botzki7
    • Alexandre Cormier7
    • Anne Pajon7
    • Erwan Corre7
    • Florian Christoph Sigloch7
    • Joachim Wolff7
    • Kaivan Kamali7
    • Korbinian Bösl7
    • Laura Cooper7
    • Laura Leroi7
    • Martin Čech7
    • Michael Charleston7
    • Personalized Health Informatics Group7
    • Praveen Kumar7
    • Robert Andrews7
    • Sergio Martínez Cuesta7
    • pajanne7
    • stortebecker7
    • Andrew Mason6
    • Anna Syme6
    • Branka Franicevic6
    • Christopher Barnett6
    • Coline Royaux6
    • Dayane Araujo6
    • ELIXIR Goblet Train the Trainers6
    • Eija Korpelainen6
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche33
    • Saskia Hiltemann25
    • Wendi Bacon24
    • Björn Grüning17
    • Donny Vrins15
    • Bazante Sanders14
    • Mehmet Tekman14
    • Beatriz Serrano-Solano12
    • Anthony Bretaudeau10
    • Bérénice Batut8
    • Pavankumar Videm7
    • Cristóbal Gallardo4
    • Marisa Loach4
    • Julia Jakiela3
    • Miaomiao Zhou3
    • Morgan Howells3
    • Nicola Soranzo3
    • Deepti Varshney2
    • Hans-Rudolf Hotz2
    • Marius van den Beek2
    • Martin Čech2
    • Nate Coraor2
    • Pablo Moreno2
    • Simon Bray2
    • Stéphanie Robin2
    • Teresa Müller2
    • pimarin2
    • Amirhossein Naghsh Nilchi1
    • Armin Dadras1
    • Carlos Chee Mendonça1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • Lucille Delisle1
    • Matúš Kalaš1
    • Mohua Das1
    • Peter van Heusden1
    • Verena Moosmann1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning30
    • slides3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets18
    • Associated Workflows15
    • Jupyter Notebook (with Solutions)15
    • Jupyter Notebook (without Solutions)15
    • Quarto/RMarkdown Notebook2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Authors: Bazante Sanders or Mehmet Tekman

33 materials found
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • beginner
    Single Cell data management transcriptomics
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • beginner
    Single Cell data management
  • e-learning

    Inferring single cell trajectories with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Bulk RNA Deconvolution with MuSiC

    • beginner
    Single Cell transcriptomics
  • e-learning

    Comparing inferred cell compositions using MuSiC deconvolution

    • beginner
    Single Cell transcriptomics
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • beginner
    10x Single Cell
  • e-learning

    Inferring single cell trajectories with Scanpy (Python)

    • beginner
    MIGHTS Single Cell jupyter-notebook paper-replication
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • e-learning

    Advanced CLI in Galaxy

    •• intermediate
    Software engineering Foundations of Data Science bash jupyter-notebook
  • e-learning

    Python - Globbing

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • 1
  • 2
  • 3
  • 4
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.