Training materials
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e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
e-learning
Essential genes detection with Transposon insertion sequencing
• beginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq -
e-learning
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio -
e-learning
Genome assembly using PacBio data
•• intermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
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