Training materials
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e-learning
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
e-learning
Creation of an interactive Galaxy tools table for your community
• beginnerSoftware engineering Community Galaxy Community Building SIG -
e-learning
Secondary metabolite discovery
• beginnerGenomics Genome Annotation -
slides
Introduction to Microbiome Analysis
• beginnerMetagenomics Microbial ecology Microbiome -
e-learning
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
• beginnerSoftware engineering Development in Galaxy -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Visualisation Ontology visualisation Data editing Clinical data … -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data retrieval Data handling Database search Query and retrieval Clinical data …
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