Training materials
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e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
e-learning
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
e-learning
Creation of an interactive Galaxy tools table for your community
• beginnerSoftware engineering Community Galaxy Community Building SIG -
e-learning
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr … -
e-learning
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Exporting Workflow Run RO-Crates from Galaxy
• beginnerFAIR Data, Workflows, and Research ro-crate workflows -
e-learning
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
e-learning
Best practices for workflows in GitHub repositories
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate