Training materials
Tools: metaQuantome
and Content provider: Galaxy Training
and Related resources: Associated Workflows
2 materials found
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Scientific topic
- Bottom-up proteomics2
- Community analysis2
- Discovery proteomics2
- Environmental microbiology2
- MS-based targeted proteomics2
- MS-based untargeted proteomics2
- Metagenomics2
- Metaproteomics2
- Metatranscriptomics2
- Microbial ecology2
- Microbiome2
- Molecular community analysis2
- Peptide identification2
- Protein and peptide identification2
- Proteogenomics2
- Proteomics2
- Quantitative proteomics2
- Shotgun metagenomics2
- Targeted proteomics2
- Top-down proteomics2
- Taxonomy1
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Tool
- Galaxy241
- FastQC32
- SAMtools26
- BEDTools16
- MultiQC16
- BWA14
- fastp14
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- Cutadapt13
- SCANPY13
- DeepTools12
- JBrowse11
- GEMINI9
- QUAST9
- taxonomy_krona_chart9
- BUSCO8
- NanoPlot8
- STAR8
- Trimmomatic8
- kraken28
- FreeBayes7
- BCFtools6
- Bandage6
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- Open Babel6
- ggplot26
- msConvert6
- BLAST5
- Bowtie 25
- Flye5
- Galactic Circos5
- HISAT25
- MSstats5
- MetaPhlAn5
- RSeQC5
- seqtk5
- BamTools4
- HUMAnN24
- KrakenTools4
- MACS4
- Merqury4
- Minimap24
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
- Newick Utilities4
- The Protein Data Bank (PDB)4
- UniProt4
- annotatemyids4
- gffread4
- mothur4
- Biopython3
- Bracken3
- Bwa-mem23
- Cardinal3
- CellProfiler3
- Clustal 1.8 (Clustal W, Clustal X)3
- Diamond3
- DropletUtils3
- FASTX-Toolkit3
- GOseq3
- Galaxy Image Analysis3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- MAFFT3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- Unicycler3
- Unipept3
- bx-python3
- compute_sequence_length3
- export2graphlan3
- gfastats3
- gffcompare3
- humann3
- pyGenomeTracks3
- scikit-image3
- snippy3
- Apollo2
- Bakta2
- Bio3D2
- COMBAT-TB Workbench2
- ChEMBL2
- ChIPpeakAnno2
- Circos2
- European Nucleotide Archive (ENA)2
- FastTree2
- FeatureCounts2
- GECKO2
- GOEnrichment2
- Gromacs2
- Heinz2
- IsoformSwitchAnalyzeR2
- MAGeCK2
- MDAnalysis2
- MEME2
- Medaka2
- PfamScan2
- QualiMap2
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Content provider
- Galaxy Training
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Difficulty level
- Intermediate2
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Target audience
- Students2
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Resource type
- e-learning2
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Related resource
- Associated Workflows
- Associated Training Datasets2
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