Training materials
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e-learning
Annotate, prepare tests and publish Galaxy workflows in workflow registries
•• intermediateFAIR Using Galaxy and Managing your Data workflows -
slides
Genome assembly and assembly QC - Introduction short version
• beginnerSequence assembly Assembly -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Genome annotation with Funannotate
•• intermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly
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