Training materials
Tools: metaQuantome
and Scientific topics: Environmental microbiology
and Contributors: Bérénice Batut
2 materials found
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Scientific topic
- Environmental microbiology
- Bottom-up proteomics2
- Community analysis2
- Discovery proteomics2
- MS-based targeted proteomics2
- MS-based untargeted proteomics2
- Metagenomics2
- Metaproteomics2
- Metatranscriptomics2
- Microbial ecology2
- Microbiome2
- Molecular community analysis2
- Peptide identification2
- Protein and peptide identification2
- Proteogenomics2
- Proteomics2
- Quantitative proteomics2
- Shotgun metagenomics2
- Targeted proteomics2
- Top-down proteomics2
- Taxonomy1
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Tool
- metaQuantome
- Galaxy16
- taxonomy_krona_chart8
- FastQC5
- kraken25
- KrakenTools4
- MetaPhlAn4
- fastp4
- HUMAnN23
- MultiQC3
- Newick Utilities3
- mothur3
- Bracken2
- Cutadapt2
- GraPhlAn2
- NanoPlot2
- SortMeRNA2
- export2graphlan2
- humann2
- ABRicate1
- BCFtools1
- BEDTools1
- BamTools1
- Bandage1
- CheckM1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- FastTree1
- Flye1
- Krona1
- MEGAHIT1
- MLST1
- Medaka1
- Minimap21
- Racon1
- Recentrifuge1
- SAMtools1
- Unicycler1
- dada21
- ggplot21
- miniasm1
- phyloseq1
- staramr1
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Content provider
- Galaxy Training2
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Difficulty level
- Intermediate2
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- Students2
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- e-learning2
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- Associated Training Datasets2
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