Training materials
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e-learning
Pseudobulk Analysis with Decoupler and EdgeR
• beginnerSingle Cell pseudobulk transcriptomics -
e-learning
Single Cell Proteomics data analysis with bioconductor-scp
• beginnerProteomics -
e-learning
Clustering 3K PBMCs with Seurat
• beginner10x Single Cell -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
e-learning
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
e-learning
Network analysis with Heinz
• beginnerTranscriptomics metatranscriptomics network analysis -
e-learning
Metabarcoding/eDNA through Obitools
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Genetic composition EBV class Metabarcoding biodiversity eDNA -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics