Training materials
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e-learning
Genome annotation with Braker3
•• intermediateGenomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1 -
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Removing the effects of the cell cycle
• beginnerSingle Cell -
e-learning
Inferring single cell trajectories with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginnerMIGHTS Single Cell paper-replication