Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms17
    • Computer programming17
    • Data structures17
    • Programming languages17
    • Software development17
    • Software engineering17
    • MicroRNA sequencing3
    • RNA sequencing3
    • RNA-Seq3
    • RNA-Seq analysis3
    • Small RNA sequencing3
    • Small RNA-Seq3
    • Small-Seq3
    • Transcriptome profiling3
    • WTSS3
    • Whole transcriptome shotgun sequencing3
    • miRNA-seq3
    • Comparative transcriptomics1
    • Computational ecology1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Personal genomics1
    • Synthetic genomics1
    • Transcriptome1
    • Transcriptomics1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Galaxy32
    • SCANPY12
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • FastQC4
    • Chipster3
    • DropletUtils3
    • anndata3
    • annotatemyids3
    • BWA2
    • FASTX-Toolkit2
    • RStudio2
    • STAR2
    • ggplot22
    • Alevin1
    • BEDTools1
    • Biopython1
    • GOEnrichment1
    • MACS1
    • MultiQC1
    • SAMtools1
    • Salmon1
    • Seurat1
    • UMI-tools1
    • compute_sequence_length1
    • epiScanpy1
    • g:Profiler1
    • seqtk1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training71
    • CSC - IT Center for Science4
    • ELIXIR Slovenia2
    • Show N_FILTERS more
    • Keyword
    • Single Cell35
    • jupyter-notebook19
    • Foundations of Data Science14
    • paper-replication12
    • MIGHTS11
    • Contributing to the Galaxy Training Material9
    • 10x6
    • Galaxy Community Building5
    • data management5
    • transcriptomics5
    • Introduction to Galaxy Analyses4
    • data import3
    • RNA-Seq2
    • Development in Galaxy2
    • EeLP2
    • eLearning2
    • epigenetics2
    • interactive-tools2
    • rmarkdown-notebook2
    • Choose your own Adventure1
    • Cloud computing1
    • CodeSpaces1
    • Command-line1
    • Community1
    • Containers1
    • Ecology1
    • GO enrichment1
    • GitPod1
    • Remote sensing1
    • SIG1
    • Single Cell technologies1
    • Using Galaxy and Managing your Data1
    • biodiversity1
    • earth-system1
    • elixir1
    • español1
    • plants1
    • scRNA-seq1
    • single cell1
    • single-cell1
    • subdomain1
    • train-the-trainers1
    • training1
    • work-in-progress1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner67
    • Intermediate6
    • Not specified3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International71
    • License Not Specified4
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students55
    • Instructors14
    • Galaxy Administrators2
    • Researchers2
    • Trainers2
    • Biologists1
    • bioinformaticians1
    • teachers1
    • Show N_FILTERS more
    • Author
    • Helena Rasche18
    • Wendi Bacon18
    • Bérénice Batut13
    • Mehmet Tekman13
    • Bazante Sanders11
    • Donny Vrins11
    • Julia Jakiela9
    • Morgan Howells6
    • Saskia Hiltemann6
    • The Carpentries6
    • Eija Korpelainen5
    • Pavankumar Videm4
    • Anne Fouilloux3
    • Maria Lehtivaara3
    • Marisa Loach3
    • Nicola Soranzo3
    • Camila Goclowski2
    • Christopher Barnett2
    • Cristóbal Gallardo2
    • Cyril Monjeaud2
    • Dave Clements2
    • Hans-Rudolf Hotz2
    • Marie Josse2
    • Michele Maroni2
    • Nadia Goué2
    • Olha Nahorna2
    • Patricia Palagi2
    • Paul Zierep2
    • Ahmed Hamid Awan1
    • Alex Ostrovsky1
    • Allegra Via1
    • Alvaro Gonzalez1
    • Andrea Bagnacani1
    • Anika Erxleben1
    • Anna Syme1
    • Anne Pajon1
    • Beatriz Serrano-Solano1
    • Björn Grüning1
    • Brane Leskosek1
    • Celia van Gelder1
    • Daniel Blankenberg1
    • Diana Chiang Jurado1
    • ELIXIR Goblet Train the Trainers1
    • Fotis E. Psomopoulos1
    • Jarno Laitinen1
    • Johan Guldmyr1
    • Johan Gustafsson1
    • John Chilton1
    • John Davis1
    • Jonathan Manning1
    • Jure Dimec1
    • Lucille Delisle1
    • Menna Gamal1
    • Nicola Mulder1
    • Sarah Morgan1
    • Shubham Kapoor1
    • Teresa Attwood1
    • Tewodros Teneke1
    • Timon Schlegel1
    • Wolfgang Maier1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Contributor
    • Wendi Bacon
    • Eija Korpelainen
    • Saskia Hiltemann519
    • Helena Rasche466
    • Björn Grüning381
    • Bérénice Batut228
    • Nicola Soranzo148
    • Martin Čech115
    • Anthony Bretaudeau101
    • Cristóbal Gallardo95
    • Niall Beard81
    • Nate Coraor63
    • Armin Dadras61
    • Gildas Le Corguillé57
    • Marius van den Beek55
    • William Durand55
    • Simon Gladman45
    • Mehmet Tekman44
    • Teresa Müller44
    • Lucille Delisle42
    • Yvan Le Bras37
    • Pavankumar Videm36
    • Wolfgang Maier35
    • Melanie Föll34
    • Beatriz Serrano-Solano32
    • Simon Bray28
    • Anup Kumar25
    • Subina Mehta25
    • Donny Vrins24
    • Maria Doyle23
    • Peter van Heusden23
    • Anne Fouilloux20
    • Julia Jakiela20
    • Bazante Sanders19
    • Anton Nekrutenko17
    • Deepti Varshney16
    • Khaled Jum'ah16
    • Mélanie Petera14
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Marie Josse12
    • Matthias Bernt12
    • Pablo Moreno12
    • David López11
    • Delphine Lariviere11
    • Gianmauro Cuccuru11
    • Marisa Loach11
    • Mira Kuntz11
    • Paul Zierep11
    • Stéphanie Robin11
    • Katarzyna Kamieniecka10
    • John Chilton9
    • Alexandre Cormier8
    • Dave Clements8
    • Leonid Kostrykin8
    • Mallory Freeberg8
    • Melissa Burke8
    • Verena Moosmann8
    • Daniel Sobral7
    • Hans-Rudolf Hotz7
    • Kaivan Kamali7
    • Katherine Do7
    • Morgan Howells7
    • Sabine Österle7
    • Tomas Klingström7
    • Anna Syme6
    • Bert Droesbeke6
    • Christopher Barnett6
    • Clemens Blank6
    • Ekaterina Polkh6
    • Enis Afgan6
    • Florian Christoph Sigloch6
    • Florian Heyl6
    • Linelle Abueg6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Clea Siguret5
    • Daniela Schneider5
    • John Davis5
    • Lieven Clement5
    • Wandrille Duchemin5
    • olisand5
    • Catherine Bromhead4
    • Coline Royaux4
    • Dave B.4
    • David Philip Judge4
    • Diana Chiang Jurado4
    • Eli Chadwick4
    • Fotis E. Psomopoulos4
    • Hélène Chiapello4
    • Laura Leroi4
    • Mateusz Kuzak4
    • Phil Reed4
    • Roland Krause4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Amirhossein Naghsh Nilchi3
    • Andrea Bagnacani3
    • Daniel Faria3
    • Daniel Neves3
    • Show N_FILTERS more
    • Resource type
    • e-learning62
    • slides9
    • course materials6
    • Video4
    • Slides2
    • Training materials2
    • Documentation1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets32
    • Associated Workflows30
    • Jupyter Notebook (with Solutions)17
    • Jupyter Notebook (without Solutions)17
    • Quarto/RMarkdown Notebook16
    • Community1
    • SIG1
    • Show N_FILTERS more
    • Node
    • Finland6
    • Slovenia2
    • Czech Republic1
    • Netherlands1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Eija Korpelainen or Wendi Bacon

77 materials found
  • e-learning

    Preview the GTN website as you edit your training material

    • beginner
    Choose your own Adventure CodeSpaces Command-line Contributing to the Galaxy Training Material GitPod
  • e-learning

    Contributing to the Galaxy Training Network with GitHub

    • beginner
    Contributing to the Galaxy Training Material
  • e-learning

    Evaluating Reference Data for Bulk RNA Deconvolution

    • beginner
    Single Cell transcriptomics
  • e-learning

    Clustering 3K PBMCs with Seurat

    • beginner
    10x Single Cell
  • e-learning

    Creating community content

    • beginner
    Galaxy Community Building
  • e-learning

    Make your tools available on your subdomain

    • beginner
    Galaxy Community Building earth-system interactive-tools subdomain
  • e-learning

    Updating tool versions in a tutorial

    • beginner
    Contributing to the Galaxy Training Material
  • e-learning

    GO Enrichment Analysis on Single-Cell RNA-Seq Data

    • beginner
    GO enrichment Single Cell single cell
  • slides

    Single-cell Formats and Resources

    • beginner
    Single Cell
  • e-learning

    Single-cell ATAC-seq standard processing with SnapATAC2

    •• intermediate
    10x Single Cell epigenetics single-cell
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.