Training materials
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slides
Galaxy Administrator Time Burden and Technology Usage
• beginnerGalaxy Server administration deploying maintenance survey -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Pre-processing of 10X Single-Cell RNA Datasets
• beginner10x Single Cell -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Monocle3
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab
• beginnerClimate interactive-tools -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
• beginnerClimate interactive-tools -
e-learning
Group tags for complex experimental designs
• beginnerUsing Galaxy and Managing your Data -
e-learning
Scanpy Parameter Iterator
• beginnerSingle Cell
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