Training materials
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e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Distributed Object Storage
• beginnerGalaxy Server administration ansible storage -
e-learning
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Best practices for workflows in GitHub repositories
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Submitting workflows to LifeMonitor
• beginnerFAIR Data, Workflows, and Research ro-crate