Training materials
-
e-learning
Genomic Data Visualisation with JBrowse
•• intermediateVisualisation gmod jbrowse1 -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
e-learning
Genome annotation with Funannotate
•• intermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning
Genome assembly using PacBio data
•• intermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Pre-processing of Single-Cell RNA Data
• beginnerSingle Cell work-in-progress -
e-learning
Downstream Single-cell RNA analysis with RaceID
• beginnerSingle Cell work-in-progress
- 1
- 2