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• • Scientific topic
  • Algorithms7
  • Biological sequences7
  • Computer programming7
  • Data structures7
  • Programming languages7
  • Sequence analysis7
  • Sequence databases7
  • Software development7
  • Software engineering7
  • Comparative transcriptomics5
  • Transcriptome5
  • Transcriptomics5
  • Assembly4
  • DNA variation4
  • Epigenomics4
  • Genetic variation4
  • Genomic variation4
  • Mutation4
  • Polymorphism4
  • Sequence assembly4
  • Somatic mutations4
  • Community analysis3
  • Computational ecology3
  • Ecoinformatics3
  • Ecological informatics3
  • Ecology3
  • Ecosystem science3
  • Environmental microbiology3
  • Metagenomics3
  • Microbial ecology3
  • Microbiome3
  • Molecular community analysis3
  • Shotgun metagenomics3
  • Antimicrobial stewardship2
  • Bottom-up proteomics2
  • DNA metabarcoding2
  • Discovery proteomics2
  • Environmental metabarcoding2
  • Exomes2
  • Genome annotation2
  • Genomes2
  • Genomics2
  • MS-based targeted proteomics2
  • MS-based untargeted proteomics2
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  • Microbial genetics2
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  • Molecular infection biology2
  • Molecular microbiology2
  • Peptide identification2
  • Personal genomics2
  • Protein and peptide identification2
  • Proteomics2
  • Quantitative proteomics2
  • RNA metabarcoding2
  • Synthetic genomics2
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  • Taxonomy2
  • Top-down proteomics2
  • Viral genomics2
  • Whole genomes2
  • eDNA metabarcoding2
  • eRNA metabarcoding2
  • ChIP-exo1
  • ChIP-seq1
  • ChIP-sequencing1
  • Chip Seq1
  • Chip sequencing1
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  • DNA polymorphism1
  • Genetic linkage1
  • Linkage1
  • Linkage mapping1
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  • Microsatellites1
  • RFLP1
  • SNP1
  • Single nucleotide polymorphism1
  • Synteny1
  • VNTR1
  • Variable number of tandem repeat polymorphism1
  • snps1
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• • Tool
  • Galaxy26
  • SAMtools6
  • BWA5
  • FastQC5
  • BEDTools4
  • Cutadapt3
  • DeepTools3
  • FreeBayes3
  • Stacks3
  • BamTools2
  • HISAT22
  • JBrowse2
  • MultiQC2
  • NanoPlot2
  • Trimmomatic2
  • Vcflib2
  • mothur2
  • pycoQC2
  • taxonomy_krona_chart2
  • DESeq21
  • FeatureCounts1
  • GEMINI1
  • GOseq1
  • HUMAnN21
  • Krona1
  • MetaPhlAn1
  • MethylDackel1
  • Newick Utilities1
  • QUAST1
  • R1
  • RSeQC1
  • SPAdes1
  • STAR1
  • Salmon1
  • Unicycler1
  • VelvetOptimiser1
  • bx-python1
  • fastp1
  • ggplot21
  • lofreq1
  • pathview1
  • pyGenomeTracks1
  • snpEff1
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• • Content provider
  • Galaxy Training49
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• • Keyword
  • Development in Galaxy7
  • Introduction to Galaxy Analyses5
  • Transcriptomics5
  • Contributing to the Galaxy Training Material4
  • Epigenetics4
  • Sequence analysis4
  • Variant Analysis4
  • microgalaxy4
  • Assembly3
  • EBV dataset3
  • EBV workflow3
  • Ecology3
  • Genetic composition EBV class3
  • Microbiome3
  • RAD-seq3
  • prokaryote3
  • DDA2
  • Galaxy Server administration2
  • Proteomics2
  • Using Galaxy and Managing your Data2
  • 16S1
  • ChIP-seq1
  • Genome Annotation1
  • HeLa1
  • QC1
  • Species population EBV class1
  • Species populations EBV class1
  • bulk1
  • collections1
  • cyoa1
  • drosophila1
  • metabarcoding1
  • rna-seq1
  • work-in-progress1
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• • Difficulty level
  • Beginner
  • Intermediate3
  • Advanced2
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• • Licence
  • Creative Commons Attribution 4.0 International49
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• • Target audience
  • Students36
  • Galaxy Administrators9
  • Instructors4
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• • Author
  • Bérénice Batut18
  • Björn Grüning14
  • Saskia Hiltemann13
  • Helena Rasche10
  • Anton Nekrutenko8
  • Nicola Soranzo7
  • Anne Pajon5
  • Dave Clements5
  • Joachim Wolff5
  • Yvan Le Bras5
  • Anika Erxleben4
  • Clemens Blank4
  • Mallory Freeberg4
  • Anthony Bretaudeau3
  • Maria Doyle3
  • Mo Heydarian3
  • Simon Gladman3
  • Alexandre Cormier2
  • Erwan Corre2
  • Florian Christoph Sigloch2
  • John Chilton2
  • Laura Leroi2
  • Martin Čech2
  • Stéphanie Robin2
  • Youri Hoogstrate2
  • Alaa Elghamry1
  • Alex Ostrovsky1
  • Andrea Bagnacani1
  • Anne Fouilloux1
  • Aysam Guerler1
  • Cameron Hyde1
  • Christopher Barnett1
  • Cristóbal Gallardo1
  • Daniel Blankenberg1
  • Dannon Baker1
  • Delphine Lariviere1
  • Devon Ryan1
  • Dilmurat Yusuf1
  • Engy Nasr1
  • Gianmauro Cuccuru1
  • Hervé Ménager1
  • Lucille Delisle1
  • Marius van den Beek1
  • Markus Wolfien1
  • Michele Maroni1
  • Nadia Goué1
  • Nate Coraor1
  • Nick Stoler1
  • Olha Nahorna1
  • Paul Zierep1
  • Pavankumar Videm1
  • Peter van Heusden1
  • Sarah Peter1
  • Valentin Marcon1
  • Vivek Bhardwaj1
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• • Contributor
  • William Durand
  • Saskia Hiltemann393
  • Helena Rasche387
  • Björn Grüning263
  • Bérénice Batut179
  • Nicola Soranzo132
  • Cristóbal Gallardo82
  • Niall Beard72
  • Anthony Bretaudeau69
  • Martin Čech64
  • Nate Coraor60
  • Gildas Le Corguillé50
  • Wendi Bacon48
  • Mehmet Tekman43
  • Simon Gladman42
  • Marius van den Beek41
  • Lucille Delisle37
  • Yvan Le Bras32
  • Pavankumar Videm26
  • Teresa Müller25
  • Beatriz Serrano-Solano22
  • Maria Doyle22
  • Julia Jakiela20
  • Anne Fouilloux19
  • Khaled Jum'ah16
  • Melanie Föll16
  • Wolfgang Maier16
  • Anup Kumar15
  • Simon Bray15
  • Deepti Varshney14
  • Donny Vrins14
  • Bazante Sanders13
  • Marie Josse13
  • Matthias Bernt12
  • Pablo Moreno12
  • Anton Nekrutenko11
  • Mélanie Petera11
  • Peter van Heusden11
  • David López10
  • Gianmauro Cuccuru10
  • Marisa Loach10
  • Mira Kuntz10
  • Subina Mehta10
  • Katarzyna Kamieniecka9
  • John Chilton8
  • Paul Zierep8
  • Delphine Lariviere7
  • Hans-Rudolf Hotz7
  • Kaivan Kamali7
  • Melissa Burke7
  • Dave Clements6
  • Ekaterina Polkh6
  • Tomas Klingström6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Florian Heyl5
  • John Davis5
  • Mallory Freeberg5
  • Pratik Jagtap5
  • Sabine Österle5
  • Stéphanie Robin5
  • Timothy J. Griffin5
  • Anna Syme4
  • Clea Siguret4
  • Coline Royaux4
  • Daniel Sobral4
  • Dave B.4
  • Eli Chadwick4
  • Enis Afgan4
  • Fotis E. Psomopoulos4
  • Andrea Bagnacani3
  • Catherine Bromhead3
  • Clemens Blank3
  • David Philip Judge3
  • Eija Korpelainen3
  • Gautier Sarah3
  • Jean-François Dufayard3
  • Jennifer Hillman-Jackson3
  • Joachim Wolff3
  • Krzysztof Poterlowicz3
  • Mateo Boudet3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Nuwan Goonasekera3
  • Pedro Fernandes3
  • Pinar Alper3
  • Roland Krause3
  • Ross Lazarus3
  • Sofoklis Keisaris3
  • Vlad Visan3
  • Xavier Garnier3
  • Ahmed Hamid Awan2
  • Amirhossein Naghsh Nilchi2
  • Anika Erxleben2
  • Camila Goclowski2
  • CicoZhang2
  • Dannon Baker2
  • Edwin den Haas2
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• • Resource type
  • e-learning33
  • slides16
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• • Related resource
  • Associated Training Datasets29
  • Associated Workflows25
  • Quarto/RMarkdown Notebook22
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