Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Antimicrobial stewardship2
    • Assembly2
    • DNA variation2
    • Exomes2
    • Genetic variation2
    • Genome annotation2
    • Genomes2
    • Genomic variation2
    • Genomics2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Mutation2
    • Personal genomics2
    • Polymorphism2
    • Sequence assembly2
    • Somatic mutations2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Biological sequences1
    • Communicable disease1
    • DNA polymorphism1
    • Epidemiology1
    • Infectious disease1
    • Microsatellites1
    • Public health1
    • Public health and epidemiology1
    • RFLP1
    • SNP1
    • Sequence analysis1
    • Sequence databases1
    • Single nucleotide polymorphism1
    • Transmissible disease1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • snippy
    • Galaxy132
    • FastQC23
    • SAMtools18
    • MultiQC13
    • JBrowse12
    • BEDTools11
    • BWA11
    • fastp11
    • Cutadapt9
    • QUAST9
    • BUSCO8
    • DeepTools8
    • NanoPlot8
    • taxonomy_krona_chart8
    • kraken27
    • Bandage6
    • Falco6
    • STAR6
    • BamTools5
    • Flye5
    • FreeBayes5
    • GEMINI5
    • Minimap25
    • Trimmomatic5
    • BCFtools4
    • BLAST4
    • Bowtie 24
    • Bwa-mem24
    • KrakenTools4
    • MetaPhlAn4
    • ggplot24
    • seqtk4
    • Cardinal3
    • Diamond3
    • GenomeScope 2.03
    • HISAT23
    • HUMAnN23
    • Merqury3
    • Newick Utilities3
    • Stacks3
    • UniProt3
    • Unicycler3
    • Unipept3
    • bx-python3
    • gfastats3
    • mothur3
    • msConvert3
    • scikit-learn3
    • Apollo2
    • Bakta2
    • Biopython2
    • Bracken2
    • ChIPpeakAnno2
    • FASTQE2
    • FASTX-Toolkit2
    • GraPhlAn2
    • InterProScan (EBI)2
    • JBrowse 22
    • MACS2
    • MEGAHIT2
    • MaxQuant2
    • Medaka2
    • OMArk2
    • RSeQC2
    • Racon2
    • RepeatMasker2
    • Salmon2
    • SortMeRNA2
    • Trim Galore2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • Vcflib2
    • clusterProfiler2
    • eggNOG-mapper v22
    • ewastools2
    • export2graphlan2
    • funannotate2
    • gffread2
    • humann2
    • lofreq2
    • metaQuantome2
    • pycoQC2
    • staramr2
    • tbl2gff32
    • ABRicate1
    • AUGUSTUS1
    • Bio3D1
    • Bowtie1
    • COMBAT-TB Workbench1
    • CheckM1
    • Circos1
    • Clair31
    • Clustal 1.8 (Clustal W, Clustal X)1
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • DropletUtils1
    • FastTree1
    • FeatureCounts1
    • Filtlong1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training2
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis2
    • microgalaxy2
    • prokaryote2
    • gmod1
    • jbrowse11
    • one-health1
    • tuberculosis1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner1
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Simon Gladman2
    • Anna Syme1
    • Peter van Heusden1
    • Thoba Lose1
    • Torsten Seemann1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut
    • Björn Grüning3
    • Helena Rasche3
    • Peter van Heusden3
    • Saskia Hiltemann3
    • Anthony Bretaudeau2
    • Wolfgang Maier2
    • Christoph Stritt1
    • Cristóbal Gallardo1
    • Galo A. Goig1
    • Jennifer Hillman-Jackson1
    • Linelle Abueg1
    • Lucille Delisle1
    • Maria Doyle1
    • Mélanie Petera1
    • Niall Beard1
    • Nicola Soranzo1
    • Simon Gladman1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: snippy

and Contributors: Bérénice Batut

2 materials found
  • e-learning

    Microbial Variant Calling

    • beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy …
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.