Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms13
    • Computer programming13
    • Data structures13
    • Programming languages13
    • Software development13
    • Software engineering13
    • Diffraction experiment7
    • Imaging7
    • Microscopy7
    • Microscopy imaging7
    • Optical super resolution microscopy7
    • Photonic force microscopy7
    • Photonic microscopy7
    • Biological sequences1
    • Community analysis1
    • Comparative transcriptomics1
    • DNA metabarcoding1
    • DNA variation1
    • Environmental metabarcoding1
    • Environmental microbiology1
    • Genetic variation1
    • Genomic variation1
    • Metabarcoding1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Mutation1
    • Polymorphism1
    • RNA metabarcoding1
    • Sequence analysis1
    • Sequence databases1
    • Shotgun metagenomics1
    • Somatic mutations1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy19
    • CellProfiler3
    • Galaxy Image Analysis3
    • scikit-image3
    • European Nucleotide Archive (ENA)2
    • FASTX-Toolkit2
    • FastQC2
    • SCANPY2
    • Salmon2
    • Alevin1
    • BWA1
    • Biopython1
    • DropletUtils1
    • GEMINI1
    • Nextclade1
    • PyTorch1
    • Targetfinder.org1
    • anndata1
    • fastp1
    • kraken21
    • lofreq1
    • miRDeep21
    • pangolin1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training32
    • Show N_FILTERS more
    • Keyword
    • Foundations of Data Science12
    • jupyter-notebook11
    • Imaging7
    • Using Galaxy and Managing your Data3
    • plants3
    • Climate2
    • Introduction to Galaxy Analyses2
    • Single Cell2
    • bioimaging2
    • covid192
    • interactive-tools2
    • paper-replication2
    • 16S1
    • AI1
    • Development in Galaxy1
    • MIGHTS1
    • Microbiome1
    • Transcriptomics1
    • Variant Analysis1
    • collections1
    • español1
    • imageanalysis1
    • metabarcoding1
    • miRNA1
    • microgalaxy1
    • nanopore1
    • one-health1
    • segmentation1
    • stress tolerance1
    • virology1
    • voronoi1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner26
    • Intermediate6
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International32
    • Show N_FILTERS more
    • Target audience
    • Students31
    • Galaxy Administrators1
    • Show N_FILTERS more
    • Author
    • Helena Rasche13
    • Bazante Sanders11
    • Donny Vrins11
    • Beatriz Serrano-Solano5
    • The Carpentries5
    • Anne Fouilloux3
    • Cristóbal Gallardo3
    • Jean-Karim Hériché2
    • Leonid Kostrykin2
    • Miguel Roncoroni2
    • Nicola Soranzo2
    • Pavankumar Videm2
    • Riccardo Massei2
    • Saskia Hiltemann2
    • Ahmed Hamid Awan1
    • Allison Creason1
    • Anna Syme1
    • Anton Nekrutenko1
    • Bert Droesbeke1
    • Boris Depoortere1
    • Bérénice Batut1
    • Cameron Watson1
    • Diana Chiang Jurado1
    • Even Moa Myklebust1
    • Hui Tang1
    • Jonathan Manning1
    • Mehmet Tekman1
    • Wendi Bacon1
    • Wolfgang Maier1
    • Yi Sun1
    • Youri Hoogstrate1
    • Show N_FILTERS more
    • Contributor
    • Beatriz Serrano-Solano
    • Saskia Hiltemann514
    • Helena Rasche471
    • Björn Grüning379
    • Bérénice Batut232
    • Nicola Soranzo148
    • Martin Čech114
    • Anthony Bretaudeau101
    • Cristóbal Gallardo95
    • Niall Beard81
    • Wendi Bacon71
    • Nate Coraor62
    • Armin Dadras61
    • Gildas Le Corguillé57
    • Marius van den Beek55
    • William Durand55
    • Mehmet Tekman44
    • Simon Gladman44
    • Teresa Müller43
    • Lucille Delisle42
    • Yvan Le Bras37
    • Pavankumar Videm36
    • Wolfgang Maier35
    • Melanie Föll34
    • Simon Bray28
    • Subina Mehta27
    • Anup Kumar25
    • Donny Vrins23
    • Maria Doyle23
    • Peter van Heusden23
    • Anne Fouilloux20
    • Julia Jakiela20
    • Bazante Sanders19
    • Anton Nekrutenko17
    • Deepti Varshney16
    • Khaled Jum'ah16
    • Mélanie Petera14
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Marie Josse12
    • Matthias Bernt12
    • Pablo Moreno12
    • David López11
    • Delphine Lariviere11
    • Gianmauro Cuccuru11
    • Marisa Loach11
    • Mira Kuntz11
    • Paul Zierep11
    • Stéphanie Robin11
    • Katarzyna Kamieniecka10
    • Alexandre Cormier8
    • Dave Clements8
    • John Chilton8
    • Leonid Kostrykin8
    • Mallory Freeberg8
    • Melissa Burke8
    • Verena Moosmann8
    • Daniel Sobral7
    • Hans-Rudolf Hotz7
    • Kaivan Kamali7
    • Morgan Howells7
    • Sabine Österle7
    • Anna Syme6
    • Bert Droesbeke6
    • Christopher Barnett6
    • Clemens Blank6
    • Eija Korpelainen6
    • Ekaterina Polkh6
    • Enis Afgan6
    • Florian Christoph Sigloch6
    • Florian Heyl6
    • Linelle Abueg6
    • Tomas Klingström6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Clea Siguret5
    • John Davis5
    • Lieven Clement5
    • Wandrille Duchemin5
    • olisand5
    • Catherine Bromhead4
    • Coline Royaux4
    • Dave B.4
    • David Philip Judge4
    • Diana Chiang Jurado4
    • Eli Chadwick4
    • Fotis E. Psomopoulos4
    • Hélène Chiapello4
    • Laura Leroi4
    • Mateusz Kuzak4
    • Phil Reed4
    • Roland Krause4
    • Romane LIBOUBAN4
    • Solenne Correard4
    • Amirhossein Naghsh Nilchi3
    • Andrea Bagnacani3
    • Daniel Faria3
    • Daniel Neves3
    • Daniela Schneider3
    • Engy Nasr3
    • Show N_FILTERS more
    • Resource type
    • e-learning29
    • slides3
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows16
    • Associated Training Datasets15
    • Jupyter Notebook (with Solutions)11
    • Jupyter Notebook (without Solutions)11
    • Quarto/RMarkdown Notebook2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Beatriz Serrano-Solano

32 materials found
  • e-learning

    Voronoi segmentation

    • beginner
    Imaging imageanalysis segmentation voronoi
  • e-learning

    Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy

    • beginner
    Imaging bioimaging
  • e-learning

    Using BioImage.IO models for image analysis in Galaxy

    • beginner
    Imaging AI bioimaging
  • e-learning

    A short introduction to Galaxy

    • beginner
    Introduction to Galaxy Analyses español
  • e-learning

    Submitting sequence data to ENA

    •• intermediate
    Using Galaxy and Managing your Data covid19
  • e-learning

    Generating a single cell matrix using Alevin

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • e-learning

    Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab

    • beginner
    Climate interactive-tools
  • e-learning

    Python - Globbing

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • e-learning

    Python - Subprocess

    •• intermediate
    Software engineering Foundations of Data Science jupyter-notebook
  • 1
  • 2
  • 3
  • 4
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.