Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics4
    • Transcriptome4
    • Transcriptomics4
    • Exomes1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Personal genomics1
    • Protein families1
    • Protein sequence classification1
    • Synthetic genomics1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • STAR
    • Galaxy229
    • FastQC24
    • SAMtools23
    • BWA16
    • MultiQC16
    • BEDTools14
    • SCANPY12
    • fastp12
    • DeepTools11
    • JBrowse11
    • scikit-learn10
    • Cutadapt9
    • Falco8
    • ggplot28
    • BCFtools7
    • FreeBayes7
    • NanoPlot7
    • QUAST7
    • Trimmomatic7
    • BUSCO6
    • BamTools6
    • GEMINI6
    • Galaxy Image Analysis6
    • MaxQuant6
    • msConvert6
    • scikit-image6
    • Galactic Circos5
    • HISAT25
    • RSeQC5
    • kraken25
    • taxonomy_krona_chart5
    • BLAST4
    • Bandage4
    • Bowtie 24
    • Bwa-mem24
    • Flye4
    • MACS4
    • MSstats4
    • Minimap24
    • SRA Software Toolkit4
    • Trim Galore4
    • UniProt4
    • Workflow4Metabolomics4
    • anndata4
    • gffread4
    • xcms4
    • Biopython3
    • Cardinal3
    • Diamond3
    • DropletUtils3
    • FASTX-Toolkit3
    • GOseq3
    • InterProScan (EBI)3
    • Merqury3
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
    • Open Babel3
    • Salmon3
    • Stacks3
    • StringTie3
    • The Protein Data Bank (PDB)3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • annotatemyids3
    • gfastats3
    • gffcompare3
    • lofreq3
    • pyGenomeTracks3
    • seqtk3
    • snippy3
    • snpEff3
    • Apollo2
    • Bakta2
    • Bio3D2
    • COMBAT-TB Workbench2
    • CellProfiler2
    • ChIPpeakAnno2
    • Circos2
    • European Nucleotide Archive (ENA)2
    • FASTQE2
    • FeatureCounts2
    • GOEnrichment2
    • GenomeScope 2.02
    • Gromacs2
    • HUMAnN22
    • IsoformSwitchAnalyzeR2
    • JBrowse 22
    • MDAnalysis2
    • MEME2
    • MetaPhlAn2
    • Newick Utilities2
    • PfamScan2
    • QualiMap2
    • RDKit2
    • RStudio2
    • SeqCode2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • bx-python2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training8
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics4
    • Single Cell3
    • 10x1
    • Genome Annotation1
    • QC1
    • alternative splicing1
    • biodiversity1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • eukaryote1
    • gmod1
    • isoform switching1
    • jbrowse11
    • rna-seq1
    • work-in-progress1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner6
    • Advanced1
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International8
    • Show N_FILTERS more
    • Target audience
    • Students8
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Mehmet Tekman3
    • Anika Erxleben2
    • Cristóbal Gallardo2
    • Lucille Delisle2
    • Pavankumar Videm2
    • Alex Ostrovsky1
    • Anthony Bretaudeau1
    • Clemens Blank1
    • Daniel Blankenberg1
    • Daniel Maticzka1
    • Florian Heyl1
    • Hans-Rudolf Hotz1
    • Mallory Freeberg1
    • Maria Doyle1
    • Mo Heydarian1
    • Nicola Soranzo1
    • Peter van Heusden1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning
    • Helena Rasche8
    • Saskia Hiltemann7
    • Bérénice Batut6
    • Cristóbal Gallardo5
    • Lucille Delisle4
    • Mehmet Tekman3
    • Nicola Soranzo3
    • Pavankumar Videm3
    • Simon Bray3
    • Wolfgang Maier3
    • Anthony Bretaudeau2
    • Armin Dadras2
    • Gildas Le Corguillé2
    • Hans-Rudolf Hotz2
    • Martin Čech2
    • Niall Beard2
    • Stéphanie Robin2
    • Wendi Bacon2
    • Alexandre Cormier1
    • Amirhossein Naghsh Nilchi1
    • Anika Erxleben1
    • Clea Siguret1
    • Clemens Blank1
    • Deepti Varshney1
    • Donny Vrins1
    • Ekaterina Polkh1
    • Erwan Corre1
    • Florian Heyl1
    • Graeme Tyson1
    • Jonathan Kreplak1
    • Laura Leroi1
    • Maria Doyle1
    • Marius van den Beek1
    • Pratik Jagtap1
    • Timothy J. Griffin1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets8
    • Associated Workflows8
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: STAR

and Contributors: Björn Grüning

8 materials found
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • beginner
    10x Single Cell
  • e-learning

    Genome annotation with Funannotate

    •• intermediate
    Genomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1
  • e-learning

    CLIP-Seq data analysis from pre-processing to motif detection

    • beginner
    Transcriptomics
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • beginner
    Single Cell work-in-progress
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • beginner
    Transcriptomics
  • slides

    Dealing with Cross-Contamination in Fixed Barcode Protocols

    • beginner
    Single Cell
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.