Training materials
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e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Removing the effects of the cell cycle
• beginnerSingle Cell -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
e-learning
Pre-processing of 10X Single-Cell RNA Datasets
• beginner10x Single Cell -
e-learning
Bulk RNA Deconvolution with MuSiC
• beginnerSingle Cell transcriptomics -
e-learning
Generating a single cell matrix using Alevin
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics