Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics12
    • Transcriptome12
    • Transcriptomics12
    • Biological sequences9
    • Sequence analysis9
    • Sequence databases9
    • Assembly6
    • DNA variation6
    • Epigenomics6
    • Exomes6
    • Genetic variation6
    • Genome annotation6
    • Genomes6
    • Genomic variation6
    • Genomics6
    • Mutation6
    • Personal genomics6
    • Polymorphism6
    • Sequence assembly6
    • Somatic mutations6
    • Synthetic genomics6
    • Viral genomics6
    • Whole genomes6
    • Antimicrobial stewardship5
    • Medical microbiology5
    • Microbial genetics5
    • Microbial physiology5
    • Microbial surveillance5
    • Microbiological surveillance5
    • Microbiology5
    • Molecular infection biology5
    • Molecular microbiology5
    • Bottom-up proteomics4
    • Discovery proteomics4
    • MS-based targeted proteomics4
    • MS-based untargeted proteomics4
    • Metaproteomics4
    • Peptide identification4
    • Protein and peptide identification4
    • Proteomics4
    • Quantitative proteomics4
    • Targeted proteomics4
    • Top-down proteomics4
    • Computational ecology3
    • Ecoinformatics3
    • Ecological informatics3
    • Ecology3
    • Ecosystem science3
    • Taxonomy3
    • Community analysis2
    • DNA metabarcoding2
    • DNA polymorphism2
    • Environmental metabarcoding2
    • Environmental microbiology2
    • Metabarcoding2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Microsatellites2
    • Molecular community analysis2
    • RFLP2
    • RNA metabarcoding2
    • SNP2
    • Shotgun metagenomics2
    • Single nucleotide polymorphism2
    • VNTR2
    • Variable number of tandem repeat polymorphism2
    • eDNA metabarcoding2
    • eRNA metabarcoding2
    • snps2
    • Algorithms1
    • Bayesian methods1
    • Biodiversity1
    • Biostatistics1
    • ChIP-exo1
    • ChIP-seq1
    • ChIP-sequencing1
    • Chip Seq1
    • Chip sequencing1
    • Chip-sequencing1
    • Computer programming1
    • Data structures1
    • Descriptive statistics1
    • Gaussian processes1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic linkage1
    • Inferential statistics1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Markov processes1
    • Multivariate statistics1
    • Probabilistic graphical model1
    • Probability1
    • Programming languages1
    • Protein families1
    • Show N_FILTERS more
    • Tool
    • Galaxy52
    • FastQC11
    • SAMtools11
    • BEDTools7
    • BWA6
    • DeepTools6
    • Cutadapt5
    • MultiQC5
    • FreeBayes4
    • BamTools3
    • HISAT23
    • JBrowse3
    • STAR3
    • Stacks3
    • Trimmomatic3
    • ggplot23
    • FASTQE2
    • FASTX-Toolkit2
    • Falco2
    • GEMINI2
    • GOseq2
    • NanoPlot2
    • RSeQC2
    • UMI-tools2
    • Vcflib2
    • mothur2
    • pycoQC2
    • taxonomy_krona_chart2
    • BCFtools1
    • Biopython1
    • Bwa-mem21
    • Cardinal1
    • ChIPpeakAnno1
    • Circos1
    • DESeq21
    • EGSEA1
    • FeatureCounts1
    • GOEnrichment1
    • Galactic Circos1
    • HUMAnN21
    • Heinz1
    • HiCExplorer1
    • IWTomics1
    • Krona1
    • MEME1
    • MetaPhlAn1
    • MethylDackel1
    • Newick Utilities1
    • Peakachu1
    • QUAST1
    • R1
    • RCAS1
    • SCANPY1
    • SPAdes1
    • SRA Software Toolkit1
    • Salmon1
    • SeqCode1
    • Subread1
    • Unicycler1
    • Unipept1
    • VelvetOptimiser1
    • annotatemyids1
    • bx-python1
    • clusterProfiler1
    • compute_sequence_length1
    • ewastools1
    • fastp1
    • fgsea1
    • g:Profiler1
    • lofreq1
    • pathview1
    • pyGenomeTracks1
    • snippy1
    • snpEff1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training76
    • Show N_FILTERS more
    • Keyword
    • Galaxy Server administration15
    • Transcriptomics12
    • Introduction to Galaxy Analyses8
    • microgalaxy8
    • ansible7
    • Epigenetics6
    • Variant Analysis6
    • git-gat6
    • prokaryote6
    • Single Cell5
    • Assembly4
    • Proteomics4
    • Sequence analysis4
    • Using Galaxy and Managing your Data4
    • biodiversity4
    • mouse4
    • work-in-progress4
    • EBV dataset3
    • Ecology3
    • Genetic composition EBV class3
    • QC3
    • RAD-seq3
    • gmod3
    • jbrowse13
    • ChIP-seq2
    • DDA2
    • EBV workflow2
    • Genome Annotation2
    • Microbiome2
    • collections2
    • jobs2
    • monitoring2
    • 10x1
    • 16S1
    • EBV workflowz1
    • GO enrichment1
    • HeLa1
    • Species population EBV class1
    • Species populations EBV class1
    • Statistics and machine learning1
    • broken1
    • bulk1
    • cyoa1
    • data1
    • drosophila1
    • español1
    • imaging1
    • interactive-tools1
    • limma-voom1
    • metabarcoding1
    • metatranscriptomics1
    • network analysis1
    • rna-seq1
    • single cell1
    • training1
    • workflows1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Advanced5
    • Intermediate5
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International76
    • Show N_FILTERS more
    • Target audience
    • Students61
    • Galaxy Administrators15
    • Show N_FILTERS more
    • Author
    • Helena Rasche18
    • Björn Grüning13
    • Bérénice Batut13
    • Anton Nekrutenko10
    • Saskia Hiltemann10
    • Simon Gladman10
    • Maria Doyle9
    • Nicola Soranzo8
    • Anika Erxleben6
    • Dave Clements6
    • Joachim Wolff6
    • Anne Pajon5
    • Nate Coraor5
    • Anthony Bretaudeau4
    • Clemens Blank4
    • Mallory Freeberg4
    • Anna Syme3
    • Belinda Phipson3
    • Delphine Lariviere3
    • Lucille Delisle3
    • Mehmet Tekman3
    • Mo Heydarian3
    • Vivek Bhardwaj3
    • Wolfgang Maier3
    • Yvan Le Bras3
    • Alexandre Cormier2
    • Erwan Corre2
    • Fidel Ramirez2
    • Florian Christoph Sigloch2
    • Florian Heyl2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Khaled Jum'ah2
    • Laura Leroi2
    • Marius van den Beek2
    • Pavankumar Videm2
    • Stéphanie Robin2
    • Torsten Seemann2
    • Ahmed Hamid Awan1
    • Alaa Elghamry1
    • Alex Ostrovsky1
    • Andrea Bagnacani1
    • Anna Trigos1
    • Anne Fouilloux1
    • Cameron Hyde1
    • Chao Zhang1
    • Charity Law1
    • Christopher Barnett1
    • Cristóbal Gallardo1
    • Daniel Blankenberg1
    • Daniel Maticzka1
    • Devon Ryan1
    • Diana Chiang Jurado1
    • Dilmurat Yusuf1
    • Ekaterina Polkh1
    • Engy Nasr1
    • Fabio Cumbo1
    • Friederike Dündar1
    • Graham Etherington1
    • James Johnson1
    • José Manuel Domínguez1
    • Jovana Maksimovic1
    • Katarzyna Kamieniecka1
    • Krzysztof Poterlowicz1
    • Marzia A Cremona1
    • Matt Ritchie1
    • Matthias Bernt1
    • Melanie Föll1
    • Menna Gamal1
    • Michele Maroni1
    • Mira Kuntz1
    • Nadia Goué1
    • Nick Stoler1
    • Olha Nahorna1
    • Peter van Heusden1
    • Pratik Jagtap1
    • Sarah Peter1
    • Shian Su1
    • Subina Mehta1
    • Timothy J. Griffin1
    • Torfinn Nome1
    • Torsten Houwaart1
    • Valentin Marcon1
    • Verena Moosmann1
    • Show N_FILTERS more
    • Contributor
    • Nicola Soranzo
    • Saskia Hiltemann252
    • Helena Rasche240
    • Björn Grüning191
    • Bérénice Batut122
    • Martin Čech51
    • Cristóbal Gallardo50
    • Niall Beard46
    • Anthony Bretaudeau45
    • Mehmet Tekman34
    • Teresa Müller34
    • Nate Coraor32
    • Armin Dadras31
    • Wendi Bacon30
    • William Durand30
    • Gildas Le Corguillé29
    • Pavankumar Videm29
    • Lucille Delisle22
    • Maria Doyle20
    • Marius van den Beek20
    • Yvan Le Bras19
    • Simon Gladman18
    • Wolfgang Maier18
    • Anup Kumar17
    • Khaled Jum'ah15
    • Subina Mehta15
    • Anne Fouilloux14
    • Julia Jakiela14
    • Beatriz Serrano-Solano13
    • Deepti Varshney13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Melanie Föll12
    • Matthias Bernt11
    • Katarzyna Kamieniecka9
    • Paul Zierep9
    • Simon Bray9
    • Anton Nekrutenko8
    • Mélanie Petera8
    • Pablo Moreno8
    • David López7
    • Kaivan Kamali7
    • Marisa Loach7
    • Verena Moosmann7
    • Gianmauro Cuccuru6
    • Hans-Rudolf Hotz6
    • Melissa Burke6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Delphine Lariviere5
    • Ekaterina Polkh5
    • Leonid Kostrykin5
    • Mira Kuntz5
    • Alexandre Cormier4
    • Anna Syme4
    • Bert Droesbeke4
    • Clea Siguret4
    • Dave Clements4
    • Florian Heyl4
    • Mallory Freeberg4
    • Stéphanie Robin4
    • Alex Ostrovsky3
    • Amirhossein Naghsh Nilchi3
    • Bazante Sanders3
    • Clemens Blank3
    • Coline Royaux3
    • Diana Chiang Jurado3
    • Engy Nasr3
    • Joachim Wolff3
    • Krzysztof Poterlowicz3
    • Mateo Boudet3
    • Miaomiao Zhou3
    • Xavier Garnier3
    • Ahmed Hamid Awan2
    • Anika Erxleben2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • CicoZhang2
    • Daniela Schneider2
    • Donny Vrins2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fabio Cumbo2
    • Fidel Ramirez2
    • Florian Christoph Sigloch2
    • Graeme Tyson2
    • Jennifer Hillman-Jackson2
    • John Davis2
    • Jonathan Manning2
    • Kenza Bazi-Kabbaj2
    • Leily Rabbani2
    • Lisanna Paladin2
    • Michelle Terese Savage2
    • Natalie Kucher2
    • Peter van Heusden2
    • Swathi Nataraj2
    • Tomas Klingström2
    • Vijay2
    • Willem de Koning2
    • Show N_FILTERS more
    • Resource type
    • e-learning66
    • slides10
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Quarto/RMarkdown Notebook73
    • Associated Workflows55
    • ansible14
    • git-gat13
    • jobs5
    • monitoring3
    • storage2
    • DDA1
    • Jupyter Notebook (with Solutions)1
    • Jupyter Notebook (without Solutions)1
    • authentication1
    • automation1
    • broken1
    • data1
    • deploying1
    • features1
    • interactive-tools1
    • tools1
    • training1
    • workflows1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Contributors: Nicola Soranzo

and Related resources: Associated Training Datasets

76 materials found
  • e-learning

    GO Enrichment Analysis on Single-Cell RNA-Seq Data

    • beginner
    GO enrichment Single Cell single cell
  • e-learning

    Network analysis with Heinz

    • beginner
    Transcriptomics metatranscriptomics network analysis
  • e-learning

    RAD-Seq Reference-based data analysis

    • beginner
    Ecology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species population EBV class biodiversity
  • e-learning

    RAD-Seq to construct genetic maps

    • beginner
    Ecology EBV dataset EBV workflowz Genetic composition EBV class RAD-seq biodiversity
  • e-learning

    RAD-Seq de-novo data analysis

    • beginner
    Ecology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species populations EBV class biodiversity
  • e-learning

    A short introduction to Galaxy

    • beginner
    Introduction to Galaxy Analyses español
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    2: RNA-seq counts to genes

    • beginner
    Transcriptomics QC limma-voom mouse
  • e-learning

    3: RNA-seq genes to pathways

    • beginner
    Transcriptomics mouse
  • e-learning

    Label-free versus Labelled - How to Choose Your Quantitation Method

    • beginner
    Proteomics DDA
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.