Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms49
    • Computer programming49
    • Data structures49
    • Programming languages49
    • Software development49
    • Software engineering49
    • Biological sequences26
    • Sequence analysis26
    • Sequence databases26
    • Exomes25
    • Genome annotation25
    • Genomes25
    • Genomics25
    • Personal genomics25
    • Synthetic genomics25
    • Viral genomics25
    • Whole genomes25
    • Computational ecology24
    • Ecoinformatics24
    • Ecological informatics24
    • Ecology24
    • Ecosystem science24
    • Comparative transcriptomics23
    • Transcriptome23
    • Transcriptomics23
    • Bayesian methods21
    • Biostatistics21
    • Descriptive statistics21
    • Gaussian processes21
    • Inferential statistics21
    • Markov processes21
    • Multivariate statistics21
    • Probabilistic graphical model21
    • Probability21
    • Statistics21
    • Statistics and probability21
    • Assembly18
    • Community analysis18
    • Environmental microbiology18
    • Microbial ecology18
    • Microbiome18
    • Molecular community analysis18
    • Sequence assembly18
    • Bottom-up proteomics17
    • Discovery proteomics17
    • MS-based targeted proteomics17
    • MS-based untargeted proteomics17
    • Metagenomics17
    • Metaproteomics17
    • Peptide identification17
    • Protein and peptide identification17
    • Proteomics17
    • Quantitative proteomics17
    • Shotgun metagenomics17
    • Targeted proteomics17
    • Top-down proteomics17
    • Antimicrobial stewardship13
    • Epigenomics13
    • Medical microbiology13
    • Microbial genetics13
    • Microbial physiology13
    • Microbial surveillance13
    • Microbiological surveillance13
    • Microbiology13
    • Molecular infection biology13
    • Molecular microbiology13
    • DNA variation11
    • Genetic variation11
    • Genomic variation11
    • Mutation11
    • Polymorphism11
    • Somatic mutations11
    • Taxonomy11
    • Diffraction experiment8
    • Imaging8
    • Microscopy8
    • Microscopy imaging8
    • Optical super resolution microscopy8
    • Photonic force microscopy8
    • Photonic microscopy8
    • Evolution7
    • Evolutionary biology7
    • Exometabolomics7
    • LC-MS-based metabolomics7
    • MS-based metabolomics7
    • MS-based targeted metabolomics7
    • MS-based untargeted metabolomics7
    • Mass spectrometry-based metabolomics7
    • Metabolites7
    • Metabolome7
    • Metabolomics7
    • Metabonomics7
    • NMR-based metabolomics7
    • Biodiversity5
    • DNA metabarcoding5
    • De novo genome sequencing5
    • Environmental metabarcoding5
    • Epidemiology5
    • Genome sequencing5
    • Metabarcoding5
    • Show N_FILTERS more
    • Tool
    • Galaxy218
    • FastQC25
    • SAMtools20
    • MultiQC16
    • scikit-learn14
    • BEDTools13
    • BWA11
    • Cutadapt11
    • DeepTools11
    • SCANPY11
    • fastp11
    • BLAST9
    • taxonomy_krona_chart9
    • Falco8
    • GEMINI8
    • FASTX-Toolkit7
    • NanoPlot7
    • kraken27
    • BamTools6
    • Bandage6
    • FreeBayes6
    • QUAST6
    • Trimmomatic6
    • ggplot26
    • Bowtie 25
    • JBrowse5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • Diamond4
    • Flye4
    • HUMAnN24
    • KrakenTools4
    • MaxQuant4
    • STAR4
    • Workflow4Metabolomics4
    • anndata4
    • annotatemyids4
    • mothur4
    • snpEff4
    • BCFtools3
    • BUSCO3
    • Biopython3
    • Bracken3
    • Bwa-mem23
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DropletUtils3
    • Galactic Circos3
    • GraPhlAn3
    • HISAT23
    • MACS3
    • MSstats3
    • Minimap23
    • Newick Utilities3
    • RStudio3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • Trim Galore3
    • bx-python3
    • export2graphlan3
    • humann3
    • seqtk3
    • xcms3
    • Cardinal2
    • ChIPpeakAnno2
    • DESeq22
    • FASTQE2
    • GECKO2
    • GOEnrichment2
    • GOseq2
    • Galaxy Image Analysis2
    • GenomeScope 2.02
    • Heinz2
    • InterProScan (EBI)2
    • JBrowse 22
    • MAFFT2
    • MEGAHIT2
    • MEME2
    • Medaka2
    • Merqury2
    • R2
    • RSeQC2
    • Racon2
    • Recentrifuge2
    • RepeatMasker2
    • SRA Software Toolkit2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • UniProt2
    • Unicycler2
    • Unipept2
    • Vcflib2
    • clusterProfiler2
    • ewastools2
    • gfastats2
    • lofreq2
    • msConvert2
    • pycoQC2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training420
    • Show N_FILTERS more
    • Keyword
    • Galaxy Server administration50
    • Single Cell34
    • biodiversity28
    • microgalaxy27
    • Ecology24
    • Foundations of Data Science24
    • Contributing to the Galaxy Training Material23
    • Transcriptomics23
    • jupyter-notebook23
    • Development in Galaxy22
    • Statistics and machine learning20
    • ansible19
    • git-gat18
    • Proteomics17
    • interactive-tools17
    • Microbiome16
    • Teaching and Hosting Galaxy training16
    • Climate15
    • Using Galaxy and Managing your Data15
    • Assembly14
    • Epigenetics13
    • Genome Annotation13
    • Introduction to Galaxy Analyses13
    • FAIR Data, Workflows, and Research12
    • MIGHTS11
    • Variant Analysis11
    • earth-system11
    • paper-replication11
    • prokaryote10
    • Sequence analysis9
    • plants9
    • Imaging8
    • data management8
    • fair8
    • work-in-progress8
    • DDA7
    • EBV dataset7
    • EBV workflow7
    • Evolution7
    • Metabolomics7
    • cyoa7
    • elixir7
    • ocean7
    • assembly6
    • gmod6
    • nanopore6
    • train-the-trainers6
    • transcriptomics6
    • Galaxy Community Building5
    • data stewardship5
    • deploying5
    • jbrowse15
    • jobs5
    • label-TMT115
    • metagenomics5
    • ro-crate5
    • 10x4
    • 16S4
    • Genetic composition EBV class4
    • QC4
    • Visualisation4
    • covid194
    • illumina4
    • metabarcoding4
    • mouse4
    • pangeo4
    • ChIP-seq3
    • RAD-seq3
    • Synthetic Biology3
    • amr3
    • bacteria3
    • bioimaging3
    • collections3
    • data import3
    • ecology3
    • eukaryote3
    • gbif3
    • metatranscriptomics3
    • modeling3
    • monitoring3
    • one-health3
    • open3
    • rmarkdown-notebook3
    • taxonomic data3
    • workflows3
    • Community composition EBV class2
    • FAIR2
    • HeLa2
    • R2
    • SQL2
    • Species population EBV class2
    • Species populations EBV class2
    • bulk2
    • climate2
    • deep-learning2
    • dmp2
    • essential genes2
    • human2
    • jupyter-lab2
    • machine-learning2
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Intermediate81
    • Advanced13
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International420
    • Show N_FILTERS more
    • Target audience
    • Students304
    • Galaxy Administrators72
    • Instructors44
    • Show N_FILTERS more
    • Author
    • Helena Rasche80
    • Bérénice Batut75
    • Saskia Hiltemann46
    • Björn Grüning31
    • Yvan Le Bras20
    • Anton Nekrutenko19
    • Nate Coraor19
    • Simon Gladman18
    • Wendi Bacon17
    • Fotis E. Psomopoulos16
    • Anne Fouilloux15
    • Nicola Soranzo15
    • Anthony Bretaudeau14
    • Marie Josse14
    • Julia Jakiela12
    • Mehmet Tekman12
    • Bazante Sanders10
    • Dave Clements10
    • Katarzyna Kamieniecka10
    • Krzysztof Poterlowicz10
    • Maria Doyle10
    • Subina Mehta10
    • The Carpentries10
    • Anup Kumar9
    • Anika Erxleben8
    • Paul Zierep8
    • Pavankumar Videm8
    • Daniel Blankenberg7
    • Joachim Wolff7
    • Kaivan Kamali7
    • Lucille Delisle7
    • Marius van den Beek7
    • Martin Čech7
    • Allegra Via6
    • Anne Pajon6
    • Coline Royaux6
    • Cristóbal Gallardo6
    • Delphine Lariviere6
    • Donny Vrins6
    • ELIXIR Goblet Train the Trainers6
    • John Chilton6
    • Melanie Föll6
    • Michael Charleston6
    • Morgan Howells6
    • Patricia Palagi6
    • Wolfgang Maier6
    • Alexandre Cormier5
    • Anna Syme5
    • Clemens Blank5
    • Dechen Bhuming5
    • Erwan Corre5
    • Katherine Do5
    • Khaled Jum'ah5
    • Laura Leroi5
    • Pratik Jagtap5
    • Stéphanie Robin5
    • Alex Ostrovsky4
    • Alireza Khanteymoori4
    • Beatriz Serrano-Solano4
    • Florian Heyl4
    • Mallory Freeberg4
    • Mira Kuntz4
    • Simon Bray4
    • Simone Leo4
    • Vivek Bhardwaj4
    • Avans Hogeschool3
    • Cyril Monjeaud3
    • Diana Chiang Jurado3
    • Emma Leith3
    • Engy Nasr3
    • Fidel Ramirez3
    • Florian Christoph Sigloch3
    • Gianmauro Cuccuru3
    • Gildas Le Corguillé3
    • Guillaume Gricourt3
    • Hans-Rudolf Hotz3
    • Ioana Popescu3
    • Jean-Loup Faulon3
    • Joan Hérisson3
    • John Davis3
    • Kenza Bazi-Kabbaj3
    • Laura Cooper3
    • Lisanna Paladin3
    • Marisa Loach3
    • Mateo Boudet3
    • Matthias Bernt3
    • Mo Heydarian3
    • Mélanie Petera3
    • Ross Lazarus3
    • Sofoklis Keisaris3
    • Thomas Duigou3
    • Youri Hoogstrate3
    • Andrea Bagnacani2
    • Anne Siegel2
    • Aysam Guerler2
    • Belinda Phipson2
    • Camila Goclowski2
    • Chao Zhang2
    • Christopher Barnett2
    • Dannon Baker2
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann
    • Helena Rasche392
    • Björn Grüning305
    • Bérénice Batut188
    • Nicola Soranzo135
    • Martin Čech102
    • Cristóbal Gallardo83
    • Anthony Bretaudeau74
    • Niall Beard73
    • Wendi Bacon64
    • Nate Coraor60
    • Armin Dadras54
    • Gildas Le Corguillé50
    • William Durand50
    • Mehmet Tekman43
    • Simon Gladman42
    • Marius van den Beek41
    • Teresa Müller40
    • Lucille Delisle38
    • Yvan Le Bras37
    • Pavankumar Videm34
    • Beatriz Serrano-Solano26
    • Wolfgang Maier25
    • Maria Doyle22
    • Anne Fouilloux20
    • Julia Jakiela20
    • Anup Kumar17
    • Khaled Jum'ah16
    • Melanie Föll16
    • Subina Mehta16
    • Simon Bray15
    • Deepti Varshney14
    • Bazante Sanders13
    • Donny Vrins13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Marie Josse12
    • Matthias Bernt12
    • Pablo Moreno12
    • Anton Nekrutenko11
    • Gianmauro Cuccuru11
    • Marisa Loach11
    • Mélanie Petera11
    • Paul Zierep11
    • Peter van Heusden11
    • David López10
    • Katarzyna Kamieniecka10
    • Mira Kuntz10
    • Delphine Lariviere9
    • Verena Moosmann8
    • Hans-Rudolf Hotz7
    • John Chilton7
    • Kaivan Kamali7
    • Leonid Kostrykin7
    • Melissa Burke7
    • Morgan Howells7
    • Alexandre Cormier6
    • Dave Clements6
    • Ekaterina Polkh6
    • Tomas Klingström6
    • Alex Ostrovsky5
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Florian Heyl5
    • John Davis5
    • Mallory Freeberg5
    • Sabine Österle5
    • Stéphanie Robin5
    • Anna Syme4
    • Clea Siguret4
    • Coline Royaux4
    • Daniel Sobral4
    • Dave B.4
    • Eli Chadwick4
    • Enis Afgan4
    • Fotis E. Psomopoulos4
    • Phil Reed4
    • Amirhossein Naghsh Nilchi3
    • Andrea Bagnacani3
    • Catherine Bromhead3
    • Clemens Blank3
    • Daniela Schneider3
    • David Philip Judge3
    • Diana Chiang Jurado3
    • Eija Korpelainen3
    • Engy Nasr3
    • Gautier Sarah3
    • Jean-François Dufayard3
    • Jennifer Hillman-Jackson3
    • Joachim Wolff3
    • Krzysztof Poterlowicz3
    • Laura Leroi3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Nuwan Goonasekera3
    • Pedro Fernandes3
    • Pinar Alper3
    • Roland Krause3
    • Ross Lazarus3
    • Show N_FILTERS more
    • Resource type
    • e-learning339
    • slides81
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets252
    • Associated Workflows192
    • Quarto/RMarkdown Notebook157
    • Jupyter Notebook (with Solutions)22
    • Jupyter Notebook (without Solutions)22
    • ansible19
    • git-gat18
    • jobs5
    • deploying3
    • monitoring3
    • ro-crate3
    • cyoa2
    • networking2
    • storage2
    • wireguard2
    • workflows2
    • Community1
    • DDA1
    • ENA1
    • FAIR1
    • SIG1
    • apollo21
    • authentication1
    • automation1
    • beacon1
    • broken1
    • cloud1
    • data1
    • features1
    • ga4gh1
    • gmod1
    • interactive-tools1
    • systemd1
    • terraform1
    • tools1
    • training1
    • work-in-progress1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Contributors: Saskia Hiltemann

420 materials found
  • e-learning

    Phylodiversity analysis quick tutorial

    • beginner
    Ecology ecology taxonomic data
  • e-learning

    Taxonomic Analysis of eDNA

    • beginner
    Ecology biodiversity
  • e-learning

    RNA-Seq data analysis, clustering and visualisation tutorial

    • beginner
    Transcriptomics PCA bulk clustering collections mouse rna-seq work-in-progress
  • slides

    Genome assembly and assembly QC - Introduction short version

    • beginner
    Sequence assembly Assembly
  • e-learning

    Using BioImage.IO models for image analysis in Galaxy

    • beginner
    Imaging AI bioimaging
  • e-learning

    Collaboration with JupyterGIS

    • beginner
    Climate
  • e-learning

    Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants

    • beginner
    Sequence analysis plants
  • e-learning

    Preview the GTN website as you edit your training material

    • beginner
    Choose your own Adventure CodeSpaces Command-line Contributing to the Galaxy Training Material GitPod
  • e-learning

    Contributing to the Galaxy Training Network with GitHub

    • beginner
    Contributing to the Galaxy Training Material
  • slides

    Foundational Aspects of Machine Learning

    • beginner
    Statistics and probability Statistics and machine learning ai-ml elixir
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • …
  • 41
  • 42
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.