Training materials
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e-learning
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse -
e-learning
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
e-learning
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
• beginnerStatistics and probability Statistics and machine learning deep-learning image-segmentation interactive-tools jupyter-lab machine-learning protein-3D-structure -
e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
e-learning
Tree thinking for tuberculosis evolution and epidemiology
• beginnerEvolutionary biology Genomics Microbiology Phylogeny Infectious disease Evolution microgalaxy one-health phylogenetics prokaryote -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Visualization of Climate Data using NetCDF xarray Map Plotting
• beginnerEcology pangeo -
e-learning
Removing the effects of the cell cycle
• beginnerSingle Cell -
e-learning
Inferring single cell trajectories with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginnerMIGHTS Single Cell paper-replication