Filter

• Sort

• • Most recent Last modified Title descending Title ascending

• Filter Clear filters

• • Scientific topic
  • Data management66
  • Metadata management66
  • Research data management (RDM)66
  • Algorithms64
  • Computer programming64
  • Data structures64
  • Programming languages64
  • Software development64
  • Software engineering64
  • FAIR data39
  • Findable, accessible, interoperable, reusable data39
  • Biological sequences31
  • Sequence analysis31
  • Sequence databases31
  • Community analysis27
  • Environmental microbiology27
  • Microbial ecology27
  • Microbiome27
  • Molecular community analysis27
  • Metagenomics25
  • Shotgun metagenomics25
  • Comparative transcriptomics24
  • Computational ecology24
  • Ecoinformatics24
  • Ecological informatics24
  • Ecology24
  • Ecosystem science24
  • Transcriptome24
  • Transcriptomics24
  • Bayesian methods23
  • Biostatistics23
  • Descriptive statistics23
  • Gaussian processes23
  • Inferential statistics23
  • Markov processes23
  • Multivariate statistics23
  • Probabilistic graphical model23
  • Probability23
  • Statistics23
  • Statistics and probability23
  • Bottom-up proteomics19
  • Discovery proteomics19
  • MS-based targeted proteomics19
  • MS-based untargeted proteomics19
  • Metaproteomics19
  • Peptide identification19
  • Protein and peptide identification19
  • Proteomics19
  • Quantitative proteomics19
  • Targeted proteomics19
  • Top-down proteomics19
  • Assembly18
  • Exomes18
  • Genome annotation18
  • Genomes18
  • Genomics18
  • Personal genomics18
  • Sequence assembly18
  • Synthetic genomics18
  • Viral genomics18
  • Whole genomes18
  • Antimicrobial stewardship16
  • Medical microbiology16
  • Microbial genetics16
  • Microbial physiology16
  • Microbial surveillance16
  • Microbiological surveillance16
  • Microbiology16
  • Molecular infection biology16
  • Molecular microbiology16
  • Epigenomics13
  • Taxonomy13
  • DNA variation12
  • Genetic variation12
  • Genomic variation12
  • Mutation12
  • Polymorphism12
  • Somatic mutations12
  • Diffraction experiment11
  • Imaging11
  • Microscopy11
  • Microscopy imaging11
  • Optical super resolution microscopy11
  • Photonic force microscopy11
  • Photonic microscopy11
  • Applied ontology10
  • Ontologies10
  • Ontology10
  • Ontology and terminology10
  • Ontology relations10
  • Terminology10
  • Upper ontology10
  • Cloud computing9
  • Computer science9
  • Exometabolomics9
  • HPC9
  • High performance computing9
  • High-performance computing9
  • LC-MS-based metabolomics9
  • MS-based metabolomics9
  • Show N_FILTERS more
• • Operation
  • Data handling44
  • File handling44
  • File processing44
  • Processing44
  • Report handling44
  • Utility operation44
  • Data extraction11
  • Data retrieval11
  • Data retrieval (metadata)11
  • Metadata retrieval11
  • Retrieval11
  • Data analysis10
  • Data brokering7
  • Data deposition7
  • Data deposition brokering7
  • Data submission7
  • Database deposition7
  • Database submission7
  • Database retrieval4
  • Query4
  • Query and retrieval4
  • Data visualisation2
  • Database search2
  • Molecular visualisation2
  • Normalisation2
  • Ontology browsing2
  • Ontology visualisation2
  • Plotting2
  • Rendering2
  • Search2
  • Standardisation2
  • Standardisation and normalisation2
  • Visualisation2
  • Alignment1
  • Alignment construction1
  • Alignment generation1
  • Allele calling1
  • Annotation1
  • Data editing1
  • Data formatting1
  • Data reformatting1
  • Exome variant detection1
  • File format conversion1
  • File formatting1
  • File reformatting1
  • Format conversion1
  • Genome variant detection1
  • Germ line variant calling1
  • Image analysis1
  • Mathematical modelling1
  • Modelling and simulation1
  • Mutation detection1
  • RNA-Seq analysis1
  • Read pre-processing1
  • Sequence read pre-processing1
  • Somatic variant calling1
  • Variant calling1
  • Variant mapping1
  • de novo mutation detection1
  • Show N_FILTERS more
• • Tool
  • Galaxy234
  • FastQC31
  • SAMtools21
  • MultiQC15
  • BEDTools14
  • BWA14
  • scikit-learn14
  • Cutadapt12
  • Data Stewardship Wizard12
  • SCANPY12
  • DeepTools11
  • fastp11
  • BLAST9
  • taxonomy_krona_chart9
  • GEMINI8
  • FreeBayes7
  • NanoPlot7
  • STAR7
  • kraken27
  • Bandage6
  • FASTX-Toolkit6
  • JBrowse6
  • QUAST6
  • Trimmomatic6
  • Bowtie 25
  • MetaPhlAn5
  • ggplot25
  • BamTools4
  • Biopython4
  • Chipster4
  • Diamond4
  • Flye4
  • HISAT24
  • HUMAnN24
  • KrakenTools4
  • MACS4
  • MaxQuant4
  • Minimap24
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
  • RStudio4
  • Workflow4Metabolomics4
  • mothur4
  • snpEff4
  • BCFtools3
  • BUSCO3
  • Bracken3
  • CellProfiler3
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DropletUtils3
  • Galactic Circos3
  • GraPhlAn3
  • MSstats3
  • Newick Utilities3
  • RSeQC3
  • SeqCode3
  • SortMeRNA3
  • Stacks3
  • annotatemyids3
  • bx-python3
  • export2graphlan3
  • humann3
  • msConvert3
  • seqtk3
  • xcms3
  • Bakta2
  • BridgeDbR2
  • Bwa-mem22
  • Cardinal2
  • ChIPpeakAnno2
  • GECKO2
  • GOEnrichment2
  • GOseq2
  • Galaxy Image Analysis2
  • GenomeScope 2.02
  • Heinz2
  • InterMine2
  • InterMineR2
  • InterProScan (EBI)2
  • MAGeCK2
  • MEGAHIT2
  • MEME2
  • Medaka2
  • Merqury2
  • Ontology Lookup Service2
  • Open Babel2
  • R2
  • Racon2
  • Recentrifuge2
  • RepeatMasker2
  • Salmon2
  • StringTie2
  • Trim Galore2
  • UniProt2
  • Unicycler2
  • Unipept2
  • Vcflib2
  • Zooma2
  • clusterProfiler2
  • ewastools2
  • gfastats2
  • Show N_FILTERS more
• • Standard database or policy
  • Minimum Information about Plant Phenotyping Experiment2
  • OBO Foundry2
  • Wheat Data Interoperability Guidelines 1
  • Bioschemas1
  • Chemical Entities of Biological Interest1
  • Common Workflow Language1
  • Crop Ontology1
  • Ensembl1
  • IUPAC International Chemical Identifier1
  • Identifiers.org Registry1
  • MDL molfile Format1
  • Multi-Crop Passport Descriptors1
  • Plant Phenotype Experiment Ontology1
  • STRING: functional protein association networks1
  • Schema.org1
  • Search Tool for Interactions of Chemicals1
  • Simplified Molecular Input Line Entry Specification Format1
  • The Human Metabolome Database1
  • Wheat Trait Ontology1
  • Wikidata1
  • data.eNanoMapper.net1
  • eNanoMapper Ontology1
  • Show N_FILTERS more
• • Content provider
  • Galaxy Training459
  • Swiss Institute of Bioinformatics44
  • Finn's Test Provider34
  • DTLS - Dutch Techcentre For Life Sciences31
  • Bioinformatics and Biomathematics Training Hub23
  • CINECA PROJECT9
  • ELIXIR Brazil9
  • IFB French Institute of Bioinformatics8
  • Centre for Digital Life Norway7
  • CSC - IT Center for Science5
  • Department of Bioinformatics - BiGCaT, Maastricht University5
  • ELIXIR Luxembourg5
  • ELIXIR Portugal5
  • ELIXIR-SI eLearning Platform (EeLP)5
  • EMBL-ABR4
  • NanoCommons4
  • University of Cambridge Bioinformatics Training4
  • Barcelona Supercomputing Center (BSC)3
  • European Bioinformatics Institute (EBI)3
  • COG-Train2
  • InterMine2
  • VIB Bioinformatics Core2
  • ELIXIR Norway1
  • ELIXIR Slovenia1
  • Novo Nordisk Foundation Center for Protein Research1
  • Test Provider1
  • de.NBI1
  • eNanoMapper1
  • Show N_FILTERS more
• • Keyword
  • Galaxy Server administration55
  • training45
  • Single Cell35
  • data management34
  • Foundations of Data Science31
  • microgalaxy30
  • jupyter-notebook29
  • Microbiome25
  • Transcriptomics25
  • Development in Galaxy24
  • Ecology24
  • Contributing to the Galaxy Training Material22
  • FAIR Data, Workflows, and Research19
  • FAIR data19
  • Statistics and machine learning19
  • ansible19
  • Proteomics18
  • git-gat18
  • FAIR17
  • Using Galaxy and Managing your Data17
  • 10x16
  • Teaching and Hosting Galaxy training16
  • genes and genomes16
  • interactive-tools16
  • Genome Annotation15
  • fair15
  • Climate14
  • Introduction to Galaxy Analyses14
  • earth-system14
  • reproducibility14
  • Data management planning13
  • Assembly13
  • Data analysis13
  • Epigenetics13
  • data stewardship13
  • Roslin Institute12
  • paper-replication12
  • Data management plan11
  • MIGHTS11
  • Variant Analysis11
  • next generation sequencing10
  • prokaryote10
  • Sequence analysis9
  • data visualisation9
  • ocean9
  • plants9
  • programming9
  • transcriptomics9
  • EBV workflow8
  • Imaging8
  • Metabolomics8
  • cyoa8
  • gmod8
  • label-free8
  • medicine and health8
  • services and resources8
  • Babraham Institute7
  • DDA7
  • EBV dataset7
  • Evolution7
  • Metadata7
  • Ontologies7
  • dmp7
  • jbrowse17
  • workflows7
  • EeLP6
  • Workflows6
  • alan bridge group6
  • assembly6
  • basic research6
  • bioinformatics6
  • database curation6
  • deploying6
  • eLearning6
  • experimental biology6
  • marc robinson-rechavi group6
  • mark ibberson group6
  • metagenomics6
  • nanopore6
  • proteins and proteomes6
  • ro-crate6
  • 16S5
  • Clinical data5
  • DMP5
  • Data management planning5
  • ELIXIR-CONVERGE5
  • Galaxy Community Building5
  • Standards5
  • biostatistics5
  • covid195
  • data management plan5
  • data sharing5
  • high-performance computing5
  • illumina5
  • jobs5
  • label-TMT115
  • machine learning5
  • metabarcoding5
  • work-in-progress5
  • Data collection4
  • Show N_FILTERS more
• • Difficulty level
  • Beginner
  • Not specified1066
  • Intermediate182
  • Advanced33
  • Show N_FILTERS more
• • Licence
  • Creative Commons Attribution 4.0 International515
  • License Not Specified101
  • Creative Commons Attribution Share Alike 4.0 International28
  • Creative Commons Attribution Non Commercial Share Alike 4.0 International12
  • Other (Not Open)12
  • Creative Commons Attribution Non Commercial No Derivatives 4.0 International8
  • Other (Non-Commercial)7
  • Apache License 2.04
  • Creative Commons Attribution Non Commercial 4.0 International4
  • Creative Commons Zero v1.0 Universal4
  • Other (Open)4
  • MIT License3
  • Creative Commons Attribution No Derivatives 4.0 International1
  • GNU General Public License v2.0 only1
  • GNU General Public License v3.0 only1
  • Other (Attribution)1
  • Show N_FILTERS more
• • Target audience
  • Students337
  • Galaxy Administrators79
  • Instructors43
  • PhD candidate27
  • Researchers24
  • Biologists21
  • PhD students16
  • Life Science Researchers15
  • bioinformaticians13
  • PhD candidates9
  • Bioinformaticians8
  • Master students7
  • Biomedical Researchers5
  • Biomedical researchers5
  • Data Managers5
  • Data Scientists5
  • Research Scientists5
  • Trainers5
  • All postgraduates4
  • Chemists4
  • Life scientists4
  • Post Docs4
  • Professors4
  • Training Designers4
  • Training instructors4
  • biologists4
  • data stewards4
  • Academia/ Research Institution3
  • Healthcare3
  • Industry3
  • Non-Profit Organisation3
  • Patient Advocates 3
  • data steward / data manager3
  • life scientists3
  • software developers, bioinformaticians3
  • rare disease patients representatives2
  • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
  • Bench biologists2
  • Biologists, Genomicists, Computer Scientists2
  • Laboratory technicians2
  • PhD2
  • Scientists2
  • Staff2
  • Undergraduate students2
  • Veterinarians2
  • computational scientists2
  • data manager2
  • policy officer2
  • post-docs2
  • project manager2
  • Anyone1
  • Beginners1
  • Biochemists1
  • Bioimage Analysts1
  • Biophysicists1
  • Computational biologists1
  • Computer Vision scientists1
  • Curators1
  • Developers1
  • General Interest1
  • Graduate students1
  • IT support1
  • Image Analysts1
  • Life sciences1
  • Microbiologists1
  • Microscopists1
  • PhD students, computer scientists, bioinformaticians and developers who need to maintain/extend existing tools or develop new tools for Galaxy. 1
  • Policy makers1
  • Post-Doctoral Fellows1
  • Postdoctoral researcher1
  • Postgraduate students1
  • Professor1
  • Public Health Professionals1
  • Python for Biologists1
  • Researcher1
  • Scientists who want to optimise their literature searches1
  • Senior Managers1
  • Senior Researchers, Lab Managers, Postdocs and PhD Students with basic knowledge of DMPs. Participants in the "Introduction to Data Management Plans" workshop.1
  • Senior scientist/ Principal investigator1
  • Software providers1
  • System administrators1
  • Technicians1
  • beginner1
  • beginner bioinformaticians1
  • biocurators1
  • data managers1
  • database managers1
  • esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
  • experimental nanoscientists1
  • geneticists1
  • journalists1
  • mass spectrometry1
  • modelers1
  • operational manager1
  • plant researchers1
  • postdocs1
  • postdoctoral researchers1
  • programmers1
  • researchers1
  • scientific researchers, public health professionals and clinicians 1
  • Show N_FILTERS more
• • Author
  • Helena Rasche85
  • Bérénice Batut76
  • SIB Swiss Institute of Bioinformatics68
  • Saskia Hiltemann47
  • Björn Grüning31
  • Anton Nekrutenko22
  • Yvan Le Bras21
  • Nicola Soranzo20
  • Wendi Bacon20
  • Katarzyna Kamieniecka18
  • Marie Josse18
  • Nate Coraor18
  • Simon Gladman18
  • Krzysztof Poterlowicz17
  • Subina Mehta17
  • Fotis E. Psomopoulos16
  • Anthony Bretaudeau15
  • Anne Fouilloux14
  • Bazante Sanders14
  • Mehmet Tekman14
  • Julia Jakiela13
  • Maria Doyle13
  • The Carpentries13
  • Katherine Do12
  • Dave Clements10
  • Donny Vrins10
  • Mijke Jetten10
  • Anup Kumar9
  • James Johnson9
  • Khaled Jum'ah9
  • Lucille Delisle9
  • Paul Zierep9
  • Pavankumar Videm9
  • Anika Erxleben8
  • Celia van Gelder8
  • Cristóbal Gallardo8
  • Geert van Geest8
  • Helen Brown8
  • Wandrille Duchemin8
  • Daniel Blankenberg7
  • Delphine Lariviere7
  • Joachim Wolff7
  • John Chilton7
  • Kaivan Kamali7
  • Korbinian Bösl7
  • Laura Cooper7
  • Marius van den Beek7
  • Martin Čech7
  • Robert Andrews7
  • Sergio Martínez Cuesta7
  • Allegra Via6
  • Andrew Mason6
  • Anne Pajon6
  • Branka Franicevic6
  • Coline Royaux6
  • ELIXIR Goblet Train the Trainers6
  • Elisabeth Gasteiger6
  • Melanie Föll6
  • Michael Charleston6
  • Patricia Palagi6
  • Philippe Rocca-Serra6
  • Sara Morsy6
  • Wolfgang Maier6
  • Xenia Perez Sitja6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Anna Syme5
  • Beatriz Serrano-Solano5
  • Clemens Blank5
  • Dechen Bhuming5
  • Egon Willighagen5
  • Erwan Corre5
  • Hans-Rudolf Hotz5
  • Kellie Snow5
  • Korneel Hens5
  • Laura Leroi5
  • Marie-Claude Blatter5
  • Mira Kuntz5
  • Morgan Howells5
  • Munazah Andrabi5
  • Nick Juty5
  • Personalized Health Informatics Group5
  • Pratik Jagtap5
  • Saskia Lawson-Tovey5
  • Alireza Khanteymoori4
  • Eija Korpelainen4
  • Emma Griffiths4
  • Engy Nasr4
  • Florian Heyl4
  • Frédéric de Lamotte4
  • Gildas Le Corguillé4
  • Grégoire Rossier4
  • Mallory Freeberg4
  • Marc Robinson-Rechavi4
  • Philippe Le Mercier4
  • Robin Engler4
  • Simon Andrews4
  • Simon Bray4
  • Simone Leo4
  • Stéphanie Robin4
  • Show N_FILTERS more
• • Contributor
  • Saskia Hiltemann397
  • Helena Rasche386
  • Björn Grüning263
  • Bérénice Batut175
  • Nicola Soranzo132
  • Cristóbal Gallardo82
  • Niall Beard72
  • Anthony Bretaudeau70
  • Martin Čech63
  • Nate Coraor59
  • Wendi Bacon51
  • Gildas Le Corguillé50
  • William Durand49
  • Mehmet Tekman43
  • Marius van den Beek41
  • Simon Gladman41
  • Lucille Delisle37
  • Yvan Le Bras34
  • Pavankumar Videm30
  • Teresa Müller25
  • Beatriz Serrano-Solano22
  • Maria Doyle22
  • Julia Jakiela20
  • Anne Fouilloux19
  • Khaled Jum'ah17
  • Melanie Föll16
  • Wolfgang Maier16
  • Anup Kumar15
  • Simon Bray15
  • Deepti Varshney14
  • Donny Vrins14
  • Bazante Sanders13
  • Marie Josse13
  • Matthias Bernt12
  • Pablo Moreno12
  • Pratik Jagtap12
  • Timothy J. Griffin12
  • Anton Nekrutenko11
  • Mélanie Petera11
  • Peter van Heusden11
  • David López10
  • Gianmauro Cuccuru10
  • Katarzyna Kamieniecka10
  • Marisa Loach10
  • Mira Kuntz10
  • Paul Zierep8
  • Delphine Lariviere7
  • Hans-Rudolf Hotz7
  • John Chilton7
  • Kaivan Kamali7
  • Melissa Burke7
  • Dave Clements6
  • Ekaterina Polkh6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Florian Heyl5
  • John Davis5
  • Mallory Freeberg5
  • Sabine Österle5
  • Stéphanie Robin5
  • Subina Mehta5
  • Tomas Klingström5
  • Anna Syme4
  • Clea Siguret4
  • Coline Royaux4
  • Daniel Sobral4
  • Dave B.4
  • Eli Chadwick4
  • Enis Afgan4
  • Fotis E. Psomopoulos4
  • Andrea Bagnacani3
  • Catherine Bromhead3
  • Clemens Blank3
  • David Philip Judge3
  • Eija Korpelainen3
  • Gautier Sarah3
  • Jean-François Dufayard3
  • Jennifer Hillman-Jackson3
  • Joachim Wolff3
  • Krzysztof Poterlowicz3
  • Mateo Boudet3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Nuwan Goonasekera3
  • Pedro Fernandes3
  • Pinar Alper3
  • Roland Krause3
  • Ross Lazarus3
  • Sofoklis Keisaris3
  • Vlad Visan3
  • Xavier Garnier3
  • Ahmed Hamid Awan2
  • Amirhossein Naghsh Nilchi2
  • Anika Erxleben2
  • Camila Goclowski2
  • CicoZhang2
  • Dannon Baker2
  • Edwin den Haas2
  • Show N_FILTERS more
• • Resource type
  • e-learning383
  • slides90
  • Slidedeck29
  • Video29
  • Slides20
  • Training materials18
  • Tutorial14
  • course materials10
  • Presentation8
  • Webinar7
  • Documentation6
  • E-learning5
  • hands-on tutorial5
  • PDF4
  • Exercise3
  • Handout3
  • Scripts3
  • slideck/ presentation3
  • Computer Software2
  • FREE online course2
  • Installation instructions2
  • Jupyter notebook2
  • Manual2
  • Vignette2
  • Series of videos1
  • API reference1
  • Book1
  • Carpentries style curriculum1
  • Mock data1
  • Recorded webinar1
  • Training materials with mock data1
  • ViralZone1
  • educational materials1
  • hackathon1
  • workflow1
  • youtube video1
  • Show N_FILTERS more
• • Related resource
  • Associated Training Datasets273
  • Associated Workflows205
  • Quarto/RMarkdown Notebook173
  • Jupyter Notebook (with Solutions)27
  • Jupyter Notebook (without Solutions)27
  • ansible19
  • git-gat18
  • jobs5
  • deploying3
  • monitoring3
  • ro-crate3
  • DMPonline2
  • Slides2
  • Workshop recording2
  • cyoa2
  • networking2
  • storage2
  • training2
  • wireguard2
  • workflows2
  • CanCOGeN1
  • Community1
  • DDA1
  • DS Wizard ELIXIR-Norway 1
  • Data Stewardship Wizard1
  • ENA1
  • FAIR1
  • GEEM1
  • Galaxy project guided tours1
  • Next generation biobanking ontology (NGBO)1
  • Public Health Alliance for Genomic Epidemiology1
  • RCN Open data policy 1
  • RDMkit 1
  • Ready For BioData Management?1
  • SIG1
  • Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
  • Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
  • apollo21
  • authentication1
  • automation1
  • beacon1
  • broken1
  • cloud1
  • data1
  • fair1
  • features1
  • ga4gh1
  • gmod1
  • gtn1
  • interactive-tools1
  • recorded guidance on how to install a SciNote account1
  • recorded intro to hackathon1
  • recorded presentation on integration of ELNs in nanosciences1
  • systemd1
  • terraform1
  • tools1
  • work-in-progress1
  • Show N_FILTERS more
• • Node
  • Switzerland44
  • Netherlands40
  • United Kingdom32
  • EMBL-EBI13
  • France10
  • Norway8
  • Finland6
  • Portugal6
  • Slovenia6
  • Spain6
  • Luxembourg5
  • Belgium4
  • Czech Republic2
  • Denmark2
  • Germany1
  • Greece1
  • Show N_FILTERS more
• Show disabled materials
• Show archived materials
• • Date added
  • In the last 24 hours
  • In the last 1 week
  • In the last 1 month