Materials - TeSS Sandbox (Training eSupport System)

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- Algorithms17
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- Operation
- Mathematical modelling6
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- Tool
- Galaxy59
- BUSCO6
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- BWA5
- SAMtools5
- QUAST4
- BCFtools3
- MultiQC3
- Open Babel3
- RDKit3
- fastp3
- gffread3
- ggplot23
- msConvert3
- seqtk3
- Apollo2
- COBREXA.jl2
- COMBAT-TB Workbench2
- Cutadapt2
- DISEASES2
- Data Stewardship Wizard2
- FastQC2
- Galactic Circos2
- HISAT22
- MAFFT2
- MaxQuant2
- Merqury2
- OMArk2
- QualiMap2
- SRA Software Toolkit2
- STAR2
- The Protein Data Bank (PDB)2
- Trimmomatic2
- UniProt2
- Workflow4Metabolomics2
- compute_sequence_length2
- iqtree2
- metaQuantome2
- snippy2
- tb-profiler2
- xcms2
- AutoDock Vina1
- BEDTools1
- BLAST1
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- Bio3D1
- BioRuby1
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- BioSimulators1
- Biopython1
- Bwa-mem21
- CARNIVAL1
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- CellNOptR1
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- ChemicalToolbox1
- Circos1
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- Data Information System (DAISY)1
- DeepTools1
- EXTRACT1
- European Nucleotide Archive (ENA)1
- FEELnc1
- Falco1
- FastTree1
- FeatureCounts1
- FlashLFQ1
- Flye1
- Fpocket1
- FreeBayes1
- GAEVAL1
- GOseq1
- Galaxy Image Analysis1
- GenomeScope 2.01
- Gromacs1
- Helixer1
- InterMine1
- InterMineR1
- InterProScan (EBI)1
- Jvarkit1
- MALDIquant1
- MDAnalysis1
- MFAssignR1
- MSstats1
- MSstatsTMT1
- MaBoSS1
- Matchms1
- Minimap21
- NCBI Resources1
- NanoPlot1
- Newick Utilities1
- Nextclade1
- OMERO1
- ORGANISMS1
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- PLAZA monocots1
- PhysiCell1
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- Standard database or policy
- STRING: functional protein association networks1
- Search Tool for Interactions of Chemicals1
- eNanoMapper Ontology1
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- Content provider
- Galaxy Training94
- ELIXIR Portugal15
- Swiss Institute of Bioinformatics13
- Finn's Test Provider11
- PerMedCoE10
- CINECA PROJECT5
- ELIXIR Brazil5
- Bioinformatics and Biomathematics Training Hub2
- DTLS - Dutch Techcentre For Life Sciences2
- IFB French Institute of Bioinformatics2
- Novo Nordisk Foundation Center for Protein Research2
- Barcelona Supercomputing Center (BSC)1
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- Keyword
- jupyter-notebook23
- Foundations of Data Science17
- Proteomics17
- Statistics and machine learning12
- Rare Diseases & Research10
- ai-ml10
- biodiversity10
- elixir10
- training10
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- Genome Annotation8
- Biomodelling7
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- Using Galaxy and Managing your Data7
- jbrowse17
- Assembly6
- FAIR6
- biostatistics6
- eukaryote6
- microgalaxy6
- Genomics5
- Large Language Model5
- covid195
- gmod5
- one-health5
- work-in-progress5
- AAI4
- Data analysis4
- Metabolomics4
- Variant Analysis4
- data visualisation4
- programming4
- torsten schwede & thierry sengstag group4
- workflows4
- RNA-Seq3
- Authentication3
- Biological databases3
- DIA3
- R3
- RNA3
- SQL3
- Single Cell3
- Visualisation3
- cell-level simulations3
- data stewardship3
- pacbio3
- prokaryote3
- proteogenomics3
- R-programming2
- 10x2
- Babraham Institute2
- COMBINE2
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- Containers2
- DMP2
- DMP templates2
- DMP tools2
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- NGS2
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- Python2
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- Standards2
- Structure prediction2
- Transcriptomics2
- VGP2
- apollo22
- assembly2
- authorisation2
- bash2
- bernd rinn group2
- biostatistics,experimental biology,functional genomics,genes and genomes,training2
- biostatistics,experimental biology,functional genomics,genes and genomes,training,mauro delorenzi & frédéric schütz group2
- biostatistics,experimental biology,functional genomics,genes and genomes,training,raphael gottardo group2
- cell simulations2
- collections2
- cyoa2
- data management plan2
- data mining2
- enanomapper2
- epigenetics2
- eukaryota2
- federated data analysis2
- game2
- genomics2
- interactive-tools2
- kubernetes2
- machine learning2
- mark ibberson group2
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- Difficulty level
- Intermediate
- Not specified1087
- Beginner748
- Advanced34
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- Licence
- Creative Commons Attribution 4.0 International117
- License Not Specified57
- Creative Commons Attribution Non Commercial Share Alike 4.0 International6
- Creative Commons Attribution Share Alike 4.0 International3
- GNU General Public License v3.0 only3
- Other (Non-Commercial)3
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International2
- Academic Free License v3.01
- Apache License 2.01
- BSD 3-Clause "New" or "Revised" License1
- Creative Commons Zero v1.0 Universal1
- GNU General Public License v2.0 only1
- MIT License1
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- Target audience
- Students92
- Academia/ Research Institution14
- Industry14
- Non-Profit Organisation14
- Healthcare11
- Researchers8
- software developers, bioinformaticians6
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities5
- Bioinformaticians5
- health professionals4
- PhD students4
- bioinformaticians4
- data stewards4
- rare disease patients representatives3
- Health Care Professionals3
- Life scientists with programming skills3
- Patient Advocates 3
- data managers3
- healthcare professionals3
- Biologists2
- Biomedical Researchers2
- Computational biologists2
- Data Managers2
- Data Scientists2
- Galaxy Administrators2
- General Physicians2
- Life Science Researchers2
- Post Docs2
- Research Scientists2
- medical students2
- modelers2
- postdoctoral researchers2
- service administrators in organizations that want to make use of ELIXIR AAI 2
- Research Assistants and Research Associates1
- All postgraduates1
- Developers wanting to distribute their MPI dependent software1
- Graduate students1
- HPC system maintainers wanting to enable MPI containers1
- Life scientists1
- Master students1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- PhD1
- Primary care doctors1
- Software developers1
- Support Staff1
- Training providers1
- Undergraduate students1
- Users wanting to construct MPI containers1
- biologists1
- computational scientists1
- data entering1
- data librarians1
- experimeintal biologist researchers1
- physisians1
- plant researchers1
- post-docs1
- programmers1
- project manager1
- scientific researchers, public health professionals and clinicians 1
- software engineers1
- statisticians1
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- Author
- SIB Swiss Institute of Bioinformatics22
- Helena Rasche21
- The Gulbenkian Training Programme in Bioinformatics14
- Wandrille Duchemin11
- Anthony Bretaudeau10
- The Carpentries10
- Bérénice Batut8
- Simon Bray7
- Pratik Jagtap6
- Raphael Mourad6
- Subina Mehta6
- Timothy J. Griffin6
- Fotis E. Psomopoulos5
- Melanie Föll5
- Praveen Kumar5
- Saskia Hiltemann5
- Anton Nekrutenko4
- Avans Hogeschool4
- Bazante Sanders4
- Delphine Lariviere4
- Geert van Geest4
- Matthias Fahrner4
- Mikael Linden4
- Robin Engler4
- Wolfgang Maier4
- Christopher Barnett3
- Cristóbal Gallardo3
- Dominik Frantisek Bucik3
- Donny Vrins3
- Emma Leith3
- James Johnson3
- Marie Crane3
- Michal Prochazka3
- Nadia Goué3
- Ray Sajulga3
- Simon Andrews3
- Stéphanie Robin3
- Ahmed Mahfouz2
- Alex Mahmoud2
- Alex Ostrovsky2
- Alexandre Cormier2
- Anna Schaar2
- Baker Matthew2
- Bartosz Bartmanski2
- Björn Grüning2
- Brandon Pickett2
- Bräunlich Gerhard2
- Daniel Blankenberg2
- Egon Willighagen2
- Enis Afgan2
- Erwan Corre2
- Flavio Lombardo2
- Florian Christoph Sigloch2
- Francesca Drummer2
- George Gavrillidis2
- Gildas Le Corguillé2
- Gustavo Ruiz Buendia2
- Helena Crowell2
- Helge Hecht2
- Hennig John2
- Henrik Nortamo2
- Isabelle Dupanloup2
- Jack Kuipers2
- Jack Kuipers and Wandrille Duchemin2
- Jana Broncova2
- Janick Mathys2
- Jayadev Joshi2
- Jesse Harrison2
- Joao Lourenço2
- John Davis2
- Jonathan Karr2
- Lars Borm2
- Lars Juhl Jensen2
- Laura Leroi2
- Linelle Abueg2
- Marco Varrone2
- Maria Christina Maniou2
- Marius van den Beek2
- Mark Robinson2
- Markus Muller and Thuong Van Du Tran2
- Markus Müller and Thuong Van Du Tran2
- Marta Lloret Llinares2
- Miroslav Kratochvil2
- Morris Riedel2
- Naveed Ishaque2
- Nuwan Goonasekera2
- Pablo Moreno2
- Personalized Health Informatics Group2
- Rachel Jeitziner Marcone2
- Ralf Gabriels2
- Rasool Saghaleyni2
- Romane LIBOUBAN2
- Schmid Emanuel2
- Simon Gladman2
- Simone Tiberi2
- Simone Tiberi and Daniele Silvestro2
- Tania Wyss Lozano2
- Tania Wyss Lozano and Gustavo Ruiz Buendia2
- Tharindu Senapathi2
- Thomas Junier2
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- Contributor
- Saskia Hiltemann81
- Helena Rasche67
- Björn Grüning64
- Bérénice Batut38
- Anthony Bretaudeau23
- Melanie Föll16
- Marius van den Beek13
- Simon Bray12
- Cristóbal Gallardo11
- Peter van Heusden11
- Subina Mehta11
- Donny Vrins9
- Anup Kumar8
- Martin Čech8
- Nicola Soranzo7
- Wolfgang Maier7
- Beatriz Serrano-Solano6
- Wendi Bacon6
- Anton Nekrutenko5
- Bazante Sanders5
- Christopher Barnett5
- Gildas Le Corguillé5
- Lieven Clement5
- Stéphanie Robin5
- Wandrille Duchemin5
- olisand5
- Armin Dadras4
- Linelle Abueg4
- Niall Beard4
- Daniel Faria3
- Daniel Neves3
- Daniel Sobral3
- Mallory Freeberg3
- Mélanie Petera3
- Romane LIBOUBAN3
- Teresa Müller3
- William Durand3
- Alexandre Cormier2
- Anna Syme2
- Clemens Blank2
- Deepti Varshney2
- Delphine Lariviere2
- Enis Afgan2
- Erik Garrison2
- Florian Christoph Sigloch2
- Harald Barsnes2
- Hélène Chiapello2
- Jasper Ouwerkerk2
- Jayadev Joshi2
- Jeroen Gilis2
- Lennart Martens2
- Lounès Chikhi2
- Lucille Delisle2
- Maria Christina Maniou2
- Mark Beaumont2
- Mikko Rautiainen2
- Nate Coraor2
- Sabine Österle2
- Solenne Correard2
- Timon Schlegel2
- Vasundra Touré2
- Vitor Sousa2
- Aitor Apaolaza 1
- Adam Taranto1
- Alexander Botzki1
- Allegra Via1
- Alvaro Gonzalez1
- Armando Arredondo1
- Armando Arredondo Soto1
- Aurélien F. A. Moumbock1
- Aysam Guerler1
- Bert Droesbeke1
- Bilal Shaikh1
- Carina Silva1
- Catherine Bromhead1
- Charlotte Soneson1
- Chris Child1
- Christoph Stritt1
- Clea Siguret1
- Daan van Vugt1
- Daniel Blankenberg1
- Dave Clements1
- David Bouyssié1
- David Castillo1
- David López1
- David Philip Judge1
- Diana Chiang Jurado1
- Erwan Corre1
- Fabio Cumbo1
- Felicitas Kindel1
- Finn Bacall1
- Florian Heyl1
- François Serra1
- Galo A. Goig1
- Helge Hecht1
- Ion Moraru1
- Jacques van Helden1
- James Johnson1
- Janick Mathys1
- John "Scooter" Morris1
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- Resource type
- e-learning102
- Documentation20
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- Scripts14
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- Webinar8
- hands-on tutorial6
- slides4
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- course materials3
- E-learning2
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- online modules2
- Series of videos1
- FREE online course1
- Mock data1
- Slides1
- slideck/ presentation1
- test?1
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- Related resource
- Associated Training Datasets52
- Associated Workflows48
- Jupyter Notebook (with Solutions)23
- Jupyter Notebook (without Solutions)23
- Quarto/RMarkdown Notebook7
- kubernetes2
- ARROWSMITH1
- DMPonline1
- Data Stewardship Wizard1
- Event1
- Slides1
- TeSS GitHub1
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- Node
- Portugal15
- Switzerland14
- EMBL-EBI6
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- Testing 1231
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- Under development1
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