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Tools: SAMtools

and Difficulty level: Intermediate

and Target audience: Students

5 materials found
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• intermediate
    Sequence analysis covid19
  • e-learning

    Identifying tuberculosis transmission links: from SNPs to transmission clusters

    •• intermediate
    Evolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote
  • e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• intermediate
    Genetic variation Variant Analysis one-health virology
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• intermediate
    Sequence assembly Assembly biodiversity covid19
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