TeSS Sandbox (Training eSupport System)

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- Scientific topic
- Protein bioinformatics27
- Protein databases27
- Protein informatics27
- Proteins27
- Protein structure20
- Protein structure analysis20
- Protein tertiary structure20
- Data management18
- Metadata management18
- Research data management (RDM)18
- Biomathematics17
- Computational biology17
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- Theoretical biology17
- Community analysis15
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- Microbiome15
- Molecular community analysis15
- Molecular diagnostics15
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- Bioinformatics14
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- Data archiving14
- Data curation14
- Data curation and archival14
- Data preservation14
- Database curation14
- Research data archiving14
- Antimicrobial stewardship13
- Chemical biology13
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- Medical microbiology13
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- Protein function analysis13
- Protein function prediction13
- Bibliography11
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- Metabolites10
- Metabolome10
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- Whole genomes10
- DNA variation9
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- Mutation9
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- Codon usage8
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- DNA microarrays8
- Database management8
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- Expression8
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- Operation
- Sequence generation1
- Sequence generation (nucleic acid)1
- Sequence generation (protein)1
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- Tool
- MGnify (was EBI Metagenomics)3
- Ontology Lookup Service3
- Zooma2
- BioRuby1
- ChEBI1
- MGnify1
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- Standard database or policy
- Ensembl8
- Protein Data Bank in Europe5
- European Nucleotide Archive4
- ChEMBL: a large-scale bioactivity database for drug discovery3
- IntAct molecular interaction database3
- ArrayExpress2
- EBI Metagenomics2
- Integrated resource of protein families, domains and functional sites2
- OBO Foundry2
- A repository of mathematical models of biological and biomedical systems1
- Cellular Microscopy Phenotype Ontology1
- Europe PubMed Central1
- Expression Atlas1
- Gene Ontology1
- MetaboLights1
- PRoteomics IDEntifications database1
- Protein Data Bank: Proteins, Interfaces, Structures and Assemblies1
- ProteomeXchange1
- PubMed Central1
- Resource Description Framework1
- The European Genome-phenome Archive1
- Variant Effect Predictor data format1
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- Content provider
- European Bioinformatics Institute (EBI)451
- CINECA PROJECT14
- ELIXIR1
- ELIXIR-SI eLearning Platform (EeLP)1
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- Keyword
- DNA RNA17
- Ontologies14
- Europe PMC11
- Proteins11
- Chemical biology10
- Introduction10
- Literature search10
- Gene Expression9
- Biomedical Literature8
- PDBe8
- Protein families7
- Genome sequencing6
- Sequence alignments6
- Structures6
- Variants6
- Network analysis5
- Programmatic access5
- Small molecules5
- Standards5
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- Text mining4
- Cross domain4
- Gene transcripts4
- Macromolecular structures4
- Metadata4
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- data harmonization4
- Annotation3
- API3
- Chemical compounds3
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- EOSC-Life3
- EVA3
- HMMs3
- MGnify3
- Metabolites3
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- Microbiology3
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- Profile Hidden Markov models3
- Protein classification3
- Protein function3
- Annotations2
- BioMart2
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- Biocurators2
- Biomedical data2
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- FAIR data2
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- GWAS2
- Galaxy2
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- Literature2
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- NGS2
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- Open science2
- Phylogenetic profiling2
- Protein sequences2
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- Protein-protein interaction networks2
- Python2
- R2
- REST API2
- Sequence Analysis2
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- Swiss-Prot2
- TrEMBL2
- UniProtKB2
- federated data analysis2
- metadata2
- ncRNA2
- Beacon queries1
- AAI 1
- AMR1
- ArrayExpress1
- Artificial intelligence1
- Auhtorisation1
- Bacteria1
- Biobanking1
- Biochemical pathways1
- Bioimaging1
- Bioinformatic analysis1
- Bioinformatic databases1
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- Difficulty level
- Not specified449
- Beginner13
- Intermediate6
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- Licence
- License Not Specified443
- Creative Commons Attribution Non Commercial Share Alike 4.0 International13
- Creative Commons Attribution Share Alike 4.0 International10
- BSD 3-Clause "New" or "Revised" License1
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
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- Target audience
- Clinicians103
- PhD students103
- Life Science Researchers3
- Life Scientists3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Beginners2
- biocurators2
- life scientists2
- software developers, bioinformaticians2
- Researchers1
- Scientists1
- Scientists who want to optimise their literature searches1
- Software developers1
- This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.1
- Training providers1
- Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.1
- bioinformaticians1
- programmers1
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- Author
- Maria Levchenko8
- Dayane Araujo6
- Marta Lloret Llinares5
- Emma Griffiths4
- Alex Mitchell2
- Rob Finn2
- Aleksandra Nenadic1
- Aravind Venkatesan1
- Carlos Martinez Ortiz1
- Carole A Goble1
- Dalia Alghamdi1
- Denise Carvalho-Silva1
- Ewan Birney1
- Finn Bacall1
- Francesco Talo1
- Frédéric Haziza1
- Guillermo Rangel Pineros1
- Henriette Harmse1
- Jonathan Dursi1
- Jordi Rambla1
- Kees van Bochove1
- Keeva Cochrane1
- Kirill Tsukanov1
- Lorna Richardson1
- Magnus Palmblad1
- Marta Teperek1
- Melissa Burke1
- Michael Crusoe1
- Michaela Th. Mayrhofer1
- Mikael Linden1
- Milo Thurston1
- Namrata Kale1
- Nancy George1
- Niall Beard1
- Ola Tarkowska1
- Pablo Moreno1
- Rebecca Campos1
- Rob Hooft1
- Sarah Jones1
- Sijin He1
- Simon Jupp1
- Sirarat Sarntivijai1
- Susanna-Assunta Sansone1
- Teresa K Attwood1
- Tony Burdett1
- Varsha Kale1
- Will Hsiao1
- Yasemin Türkyilmaz-van der Velden1
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- Contributor
- Michael Parkin3
- Alex Mitchell2
- Rob Finn2
- Aitor Apaolaza 1
- Alvaro Gonzalez1
- Aravind Venkatesan1
- Chris Child1
- Daan van Vugt1
- Elisabeth Busch1
- Finn Bacall1
- Francesco Talo1
- Guillermo Rangel Pineros1
- Lorna Richardson1
- Michael Crusoe1
- Milo Thurston1
- Niall Beard1
- Nick May1
- Ola Tarkowska1
- Rebecca Campos1
- Stefan Negru1
- Teemu Kataja1
- Varsha Kale1
- Yogmatee Rochun1
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- Resource type
- Recorded webinar235
- e-learning100
- Course materials43
- Video17
- Webinar13
- Online tutorial3
- Life Sciences Literature Database2
- Tutorial2
- Series of videos1
- Installation instructions1
- Manual1
- Slides1
- Training materials1
- hands-on tutorial1
- slides1
- test?1
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- Related resource
- CanCOGeN1
- GEEM1
- Galaxy project guided tours1
- Next generation biobanking ontology (NGBO)1
- Public Health Alliance for Genomic Epidemiology1
- TeSS GitHub1
- TeSS Redesign Figma 1
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- Node
- EMBL-EBI
- Switzerland74
- Netherlands55
- United Kingdom53
- Belgium23
- Portugal21
- Finland15
- France12
- Slovenia11
- Czech Republic10
- Norway9
- Luxembourg8
- Spain7
- Denmark4
- Sweden4
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- Collection
- Testing 1231
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- Status
- Under development1
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Training materials

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and Node: EMBL-EBI

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Training materials

PDBe Graph Database: A Neo4J-driven integrative knowledge graph for structural data

Using the InterPro website in your research

Searching with the PDBe API

Creating complex PDBe API queries

Multi-omics comparative pathway analysis with ReactomeGSA

Using the PDBe graph API

PDBe tools in GitHub

Data visualisation at PDBe

Introduction to PDBe programmatic access

Europe PMC: Programmatic access