Training materials
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Webinar
Ontology Lookup Service (OLS)
Ontology and terminology
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BD2K Data Science Open Educational Resources (OERs)
Ontology Biocuration Curation Identifiers Standards
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Scientific topic
- Data management105
- Metadata management105
- Research data management (RDM)105
- Algorithms89
- Computer programming89
- Data structures89
- Programming languages89
- Software development89
- Software engineering89
- Exomes63
- Genome annotation63
- Genomes63
- Genomics63
- Personal genomics63
- Synthetic genomics63
- Viral genomics63
- Whole genomes63
- Bottom-up proteomics58
- Discovery proteomics58
- MS-based targeted proteomics58
- MS-based untargeted proteomics58
- Metaproteomics58
- Peptide identification58
- Protein and peptide identification58
- Proteomics58
- Quantitative proteomics58
- Targeted proteomics58
- Top-down proteomics58
- Bayesian methods47
- Biostatistics47
- Descriptive statistics47
- Gaussian processes47
- Inferential statistics47
- Markov processes47
- Multivariate statistics47
- Probabilistic graphical model47
- Probability47
- Statistics47
- Statistics and probability47
- FAIR data44
- Findable, accessible, interoperable, reusable data44
- Biological sequences41
- Sequence analysis41
- Sequence databases41
- Community analysis39
- Comparative transcriptomics39
- Environmental microbiology39
- Microbial ecology39
- Microbiome39
- Molecular community analysis39
- Transcriptome39
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- Metagenomics37
- Shotgun metagenomics37
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- Medical microbiology36
- Microbial genetics36
- Microbial physiology36
- Microbial surveillance36
- Microbiological surveillance36
- Microbiology36
- Molecular infection biology36
- Molecular microbiology36
- Bioinformatics31
- DNA variation30
- Genetic variation30
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- Assembly28
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- Sequence assembly28
- Computational ecology27
- Ecoinformatics27
- Ecological informatics27
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- Protein bioinformatics26
- Protein databases26
- Protein informatics26
- Proteins26
- Biomathematics25
- Computational biology25
- Mathematical biology25
- Protein structure25
- Protein structure analysis25
- Protein tertiary structure25
- Theoretical biology25
- Exometabolomics22
- LC-MS-based metabolomics22
- MS-based metabolomics22
- MS-based targeted metabolomics22
- MS-based untargeted metabolomics22
- Mass spectrometry-based metabolomics22
- Metabolites22
- Metabolome22
- Metabolomics22
- Metabonomics22
- NMR-based metabolomics22
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Operation
- Data handling3
- File handling3
- File processing3
- Processing3
- Report handling3
- Utility operation3
- Data extraction2
- Data retrieval2
- Data retrieval (metadata)2
- Metadata retrieval2
- Retrieval2
- Data editing1
- Data visualisation1
- Database retrieval1
- Database search1
- Molecular visualisation1
- Normalisation1
- Ontology browsing1
- Ontology visualisation1
- Plotting1
- Query1
- Query and retrieval1
- Rendering1
- Search1
- Standardisation1
- Standardisation and normalisation1
- Visualisation1
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Standard database or policy
- OBO Foundry1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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Keyword
- Ontologies5
- Annotation3
- Clinical data3
- Ontology3
- Standards3
- Curation2
- Data integration2
- Data semantics2
- FAIR2
- RDF2
- data harmonization2
- ATC1
- Biocuration1
- CHOP1
- CINECA1
- Cohort data1
- Data Integration1
- ICD1
- Identifiers1
- Knowledge graph1
- LOINC1
- OWL1
- Ontology editing1
- Protegé1
- Query data1
- SNOMED CT1
- SPARQL1
- Software1
- Sofware curation1
- Standardised vocabulary1
- Tool curation1
- Tools1
- Triplestore1
- data annotation1
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Difficulty level
- Beginner10
- Not specified2
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Target audience
- Bioinformaticians3
- Biomedical Researchers3
- Data Managers3
- Data Scientists3
- Research Scientists3
- biocurators3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).1
- Biologists1
- Chemists1
- Curators1
- Developers1
- Researchers1
- Software providers1
- bioinformaticians1
- life scientists1
- software developers, bioinformaticians1
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Contributor
- Sabine Österle3
- Kristin Gnodke1
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Related resource
- GEEM1
- Next generation biobanking ontology (NGBO)1
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