Training materials
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e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
e-learning
Genome annotation with Helixer
•• intermediateGenome Annotation eukaryota helixer jbrowse1 -
e-learning
Marine Omics identifying biosynthetic gene clusters
• beginnerEcology earth-system marine omics ocean -
e-learning
Exploring microbial ecosystems: A curated collection of EMBL-EBI on-demand training
Microbial ecology Microbiology Metagenomics Biodiversity Statistics and probability Open access microbiome microbial ecosystems
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e-learning
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons
••• advancedGenetic variation Variant Analysis -
e-learning
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)
• beginnerGenetic variation Variant Analysis -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell