Training materials
Licence: Creative Commons Attribution 4.0 International
and Keywords: biodiversity
41 materials found
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Scientific topic
- Computational ecology20
- Ecoinformatics20
- Ecological informatics20
- Ecology20
- Ecosystem science20
- Exomes16
- Genome annotation16
- Genomes16
- Genomics16
- Personal genomics16
- Synthetic genomics16
- Viral genomics16
- Whole genomes16
- Assembly13
- Sequence assembly13
- Biodiversity10
- Gene and protein families3
- Gene families3
- Gene family3
- Gene system3
- Genes, gene family or system3
- Protein families3
- Protein sequence classification3
- Animal2
- Animal biology2
- Animal genetics2
- Animal physiology2
- Animals2
- Antimicrobial stewardship2
- Biological sequences2
- Botany2
- Entomology2
- Medical microbiology2
- Metazoa2
- Microbial genetics2
- Microbial physiology2
- Microbial surveillance2
- Microbiological surveillance2
- Microbiology2
- Molecular infection biology2
- Molecular microbiology2
- Plant2
- Plant anatomy2
- Plant biology2
- Plant cell biology2
- Plant ecology2
- Plant genetics2
- Plant physiology2
- Plant science2
- Plants2
- Sequence analysis2
- Sequence databases2
- Zoology2
- 3C technologies1
- 3C-based methods1
- Chromatin accessibility1
- Chromatin accessibility assay1
- Chromosome conformation analysis1
- Chromosome conformation capture1
- Comparative genomics1
- Data clean-up1
- Data cleaning1
- Data integrity1
- Data mining1
- Data quality1
- Data quality management1
- Function analysis1
- Functional analysis1
- Low complexity sequences1
- Mitochondria1
- Nucleic acid repeats1
- Pattern recognition1
- Phylogenetic clocks1
- Phylogenetic dating1
- Phylogenetic simulation1
- Phylogenetic stratigraphy1
- Phylogeny1
- Phylogeny reconstruction1
- Protein function analysis1
- Protein function prediction1
- Protein repeats1
- Protein sequence features1
- Protein sequence repeats1
- Protein sites, features and motifs1
- Repeat sequences1
- Sequence complexity1
- Sequence composition1
- Sequence composition, complexity and repeats1
- Sequence repeats1
- Signal peptide cleavage sites1
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Tool
- Galaxy41
- BUSCO9
- JBrowse6
- QUAST5
- BLAST4
- Diamond3
- Flye3
- GenomeScope 2.03
- InterProScan (EBI)3
- Merqury3
- Minimap23
- NanoPlot3
- OMArk3
- STAR3
- Stacks3
- fastp3
- gfastats3
- gffread3
- Apollo2
- BEDTools2
- BWA2
- Bandage2
- Bwa-mem22
- FastQC2
- Helixer2
- RepeatMasker2
- SAMtools2
- Unicycler2
- eggNOG-mapper v22
- funannotate2
- Biopython1
- Clustal 1.8 (Clustal W, Clustal X)1
- Cutadapt1
- FASTX-Toolkit1
- GAEVAL1
- GEMINI1
- MAFFT1
- Medaka1
- MultiQC1
- OBITools1
- Prodigal1
- Proteinortho1
- RED1
- Racon1
- RapidNJ1
- RepeatModeler1
- SALSA1
- Smudgeplots1
- bx-python1
- kraken21
- orfipy1
- pilon1
- purge_dups1
- seqtk1
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Content provider
- Galaxy Training41
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Keyword
- biodiversity
- Galaxy Server administration58
- jupyter-notebook55
- Foundations of Data Science51
- Proteomics44
- Single Cell40
- microgalaxy39
- Statistics and machine learning35
- Genome Annotation28
- Transcriptomics28
- Contributing to the Galaxy Training Material27
- Ecology27
- Using Galaxy and Managing your Data27
- Development in Galaxy24
- Assembly21
- ansible20
- Microbiome19
- data management19
- interactive-tools19
- FAIR Data, Workflows, and Research18
- Variant Analysis18
- git-gat18
- Teaching and Hosting Galaxy training17
- elixir17
- work-in-progress17
- jbrowse116
- Climate15
- fair15
- Imaging14
- data stewardship14
- earth-system14
- gmod14
- Epigenetics13
- FAIR13
- Introduction to Galaxy Analyses13
- prokaryote13
- Data analysis12
- FAIR data12
- Metabolomics12
- Sequence analysis12
- paper-replication12
- Data management planning11
- MIGHTS11
- ai-ml11
- cyoa11
- Evolution10
- covid1910
- eukaryote10
- label-free10
- plants10
- Computational chemistry9
- DDA9
- ocean9
- one-health9
- workflows9
- assembly8
- 10x7
- Data management plan7
- EBV dataset7
- EBV workflow7
- Visualisation7
- collections7
- dmp7
- R6
- bioimaging6
- deploying6
- metagenomics6
- nanopore6
- rmarkdown-notebook6
- ro-crate6
- train-the-trainers6
- transcriptomics6
- 16S5
- Bioinformatics5
- Galaxy Community Building5
- Genomics5
- Large Language Model5
- SQL5
- illumina5
- jobs5
- label-TMT115
- metabarcoding5
- mouse5
- storage5
- virology5
- Data collection4
- Data preserving4
- Data sharing4
- DIA4
- DMP4
- Data management planning4
- Genetic composition EBV class4
- HeLa4
- QC4
- RNA4
- bacteria4
- data management plan4
- pangeo4
- tools4
- Data processing3
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Difficulty level
- Beginner30
- Intermediate11
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Target audience
- Students41
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Author
- Yvan Le Bras16
- Anthony Bretaudeau9
- Marie Josse7
- Delphine Lariviere6
- Anton Nekrutenko4
- Coline Royaux4
- Alexandre Cormier3
- Anna Syme3
- Cristóbal Gallardo3
- Erwan Corre3
- Laura Leroi3
- Romane LIBOUBAN3
- Stéphanie Robin3
- Alex Ostrovsky2
- Brandon Pickett2
- Bérénice Batut2
- Elisa Michon2
- Linelle Abueg2
- Olivier Norvez2
- Pauline Seguineau2
- Simon Benateau2
- Brigida Gallone1
- Clara Urfer1
- Dominique Pelletier1
- Eric Coissac1
- Fabian Recktenwald1
- Frédéric Boyer1
- Giulio Formenti1
- Helena Rasche1
- Jean Le Cras1
- Jean-Baptiste Mihoub1
- John Beliveau1
- Jonathan Kreplak1
- Laura Russell1
- Marcella Sozzoni1
- Mateo Boudet1
- Miguel Roncoroni1
- Nathan Dunn1
- Simon Gladman1
- Solenne Correard1
- Sophie Pamerlon1
- Tanguy Genthon1
- Tom Brown1
- Wolfgang Maier1
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Contributor
- Saskia Hiltemann39
- Helena Rasche32
- Björn Grüning28
- Bérénice Batut23
- Yvan Le Bras18
- Anthony Bretaudeau12
- Cristóbal Gallardo10
- Deepti Varshney5
- Delphine Lariviere5
- Gildas Le Corguillé5
- Anna Syme4
- Anton Nekrutenko4
- Marie Josse4
- Niall Beard4
- Nicola Soranzo4
- Stéphanie Robin4
- Teresa Müller4
- William Durand4
- Coline Royaux3
- Simon Bray3
- Wolfgang Maier3
- Alexandre Cormier2
- Jonathan Kreplak2
- Laura Leroi2
- Linelle Abueg2
- Solenne Correard2
- Verena Moosmann2
- Ankerl Yassine1
- Anne Fouilloux1
- Daniela Schneider1
- Donny Vrins1
- Enis Afgan1
- Erwan Corre1
- Felicitas Kindel1
- Jasper Ouwerkerk1
- Jean Le Cras1
- John Beliveau1
- Marius van den Beek1
- Martin Čech1
- Miguel Roncoroni1
- Nate Coraor1
- Romane LIBOUBAN1
- Saim Momin1
- Simon Gladman1
- Tom Brown1
- Wendi Bacon1
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Resource type
- e-learning41
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Related resource
- Associated Workflows34
- Associated Training Datasets28
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