Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics28
    • Transcriptome28
    • Transcriptomics28
    • Content management2
    • Data management2
    • Database management2
    • Document management2
    • File management2
    • Informatics2
    • Information management2
    • Information science2
    • Knowledge management2
    • Metadata management2
    • Record management2
    • Research data management (RDM)2
    • MicroRNA sequencing1
    • RNA sequencing1
    • RNA-Seq1
    • RNA-Seq analysis1
    • Small RNA sequencing1
    • Small RNA-Seq1
    • Small-Seq1
    • Transcriptome profiling1
    • WTSS1
    • Whole transcriptome shotgun sequencing1
    • miRNA-seq1
    • Show N_FILTERS more
    • Tool
    • Galaxy22
    • FastQC5
    • MultiQC5
    • RSeQC5
    • Cutadapt4
    • GOseq4
    • HISAT24
    • SAMtools4
    • STAR4
    • BEDTools3
    • ggplot23
    • pyGenomeTracks3
    • DESeq22
    • DeepTools2
    • FeatureCounts2
    • Heinz2
    • IsoformSwitchAnalyzeR2
    • PfamScan2
    • R2
    • Salmon2
    • StringTie2
    • Trimmomatic2
    • annotatemyids2
    • fastp2
    • gffcompare2
    • gffread2
    • rnaQUAST2
    • Biopython1
    • ChiRA1
    • EGSEA1
    • Falco1
    • GOEnrichment1
    • MEME1
    • Peakachu1
    • RCAS1
    • SRA Software Toolkit1
    • Subread1
    • Targetfinder.org1
    • Trinity1
    • UMI-tools1
    • blockbuster1
    • edgeR1
    • fgsea1
    • limma1
    • miRDeep21
    • pathview1
    • tidybulk1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training46
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics
    • git-gat
    • training64
    • Galaxy Server administration58
    • jupyter-notebook55
    • Foundations of Data Science51
    • Proteomics45
    • biodiversity42
    • data management41
    • Single Cell40
    • microgalaxy39
    • Statistics and machine learning35
    • FAIR28
    • Contributing to the Galaxy Training Material27
    • Ecology27
    • Genome Annotation27
    • Rare Diseases & Research27
    • Using Galaxy and Managing your Data27
    • Bioinformatics25
    • Development in Galaxy24
    • Assembly22
    • Data analysis20
    • FAIR data20
    • ansible20
    • Microbiome19
    • data stewardship19
    • genes and genomes19
    • interactive-tools19
    • DNA RNA18
    • FAIR Data, Workflows, and Research18
    • Variant Analysis18
    • Teaching and Hosting Galaxy training17
    • elixir17
    • work-in-progress17
    • Python16
    • Roslin Institute16
    • Sequence analysis16
    • life-sciences16
    • reproducibility16
    • Climate15
    • Imaging15
    • Ontologies15
    • fair15
    • jbrowse115
    • transcriptomics15
    • Programming14
    • earth-system14
    • gmod14
    • Data management planning13
    • Babraham Institute13
    • Epigenetics13
    • Introduction to Galaxy Analyses13
    • Proteins13
    • R13
    • Shell13
    • data visualisation13
    • medicine and health13
    • next generation sequencing13
    • programming13
    • prokaryote13
    • EeLP12
    • Metabolomics12
    • eLearning12
    • health-informatics12
    • paper-replication12
    • Chemical biology11
    • Data management plan11
    • Europe PMC11
    • Git11
    • Introduction bioinformatics11
    • MIGHTS11
    • Metadata11
    • ai-ml11
    • biostatistics11
    • cyoa11
    • plants11
    • workflows11
    • Evolution10
    • Extras10
    • Gene Expression10
    • HPC10
    • Introduction10
    • Literature search10
    • Phylogenetics10
    • covid1910
    • eukaryote10
    • label-free10
    • mark ibberson group10
    • services and resources10
    • Computational chemistry9
    • DDA9
    • Genomics9
    • Python biologists9
    • Standards9
    • bioinformatics9
    • computer-science9
    • machine learning9
    • metadata9
    • ocean9
    • one-health9
    • Show N_FILTERS more
    • Difficulty level
    • Beginner44
    • Intermediate2
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International46
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students28
    • Galaxy Administrators18
    • Biologists1
    • Show N_FILTERS more
    • Author
    • Helena Rasche14
    • Maria Doyle9
    • Nate Coraor6
    • Bérénice Batut4
    • Lucille Delisle4
    • Mira Kuntz4
    • Pavankumar Videm4
    • Simon Gladman4
    • Anthony Bretaudeau3
    • Belinda Phipson3
    • Björn Grüning3
    • Cristóbal Gallardo3
    • Mallory Freeberg3
    • Marius van den Beek3
    • Saskia Hiltemann3
    • Anika Erxleben2
    • Anne Siegel2
    • Chao Zhang2
    • Harriet Dashnow2
    • Mateo Boudet2
    • Mo Heydarian2
    • Nicola Soranzo2
    • Olivier Dameron2
    • Xavier Garnier2
    • Andrea Bagnacani1
    • Anna Trigos1
    • Anton Nekrutenko1
    • Beatriz Serrano-Solano1
    • Casper de Visser1
    • Charity Law1
    • Charlotte Adang1
    • Clemens Blank1
    • Daniel Maticzka1
    • Erwan Corre1
    • Florian Heyl1
    • Fotis E. Psomopoulos1
    • Gianmauro Cuccuru1
    • Gildas Le Corguillé1
    • IGC Bioinformatics Unit1
    • Iacopo Cristoferi1
    • Jovana Maksimovic1
    • Laila Los1
    • Marek Ostaszewski1
    • Markus Wolfien1
    • Martin Čech1
    • Matt Ritchie1
    • Matthias Bernt1
    • Matti Hoch1
    • Myrthe van Baardwijk1
    • Nuwan Goonasekera1
    • Peter van Heusden1
    • Peter-Bram 't Hoen1
    • Sanne Abeln1
    • Shian Su1
    • Sofoklis Keisaris1
    • Stefano Mangiola1
    • Toby Hodges1
    • Torfinn Nome1
    • Xi Liu1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann44
    • Helena Rasche42
    • Björn Grüning34
    • Nicola Soranzo26
    • Bérénice Batut20
    • Lucille Delisle20
    • Martin Čech20
    • Nate Coraor19
    • Marius van den Beek18
    • Simon Gladman13
    • Anthony Bretaudeau10
    • Armin Dadras10
    • Mira Kuntz9
    • Cristóbal Gallardo8
    • Gianmauro Cuccuru8
    • Gildas Le Corguillé7
    • Niall Beard7
    • Maria Doyle6
    • William Durand5
    • Wolfgang Maier5
    • Pavankumar Videm4
    • Tomas Klingström4
    • Anne Fouilloux3
    • Mallory Freeberg3
    • Xavier Garnier3
    • Catherine Bromhead2
    • CicoZhang2
    • Edwin den Haas2
    • Enis Afgan2
    • Mehmet Tekman2
    • Mélanie Petera2
    • Nuwan Goonasekera2
    • Torfinn Nome2
    • Amirhossein Naghsh Nilchi1
    • Andrea Bagnacani1
    • Anika Erxleben1
    • Beatriz Serrano-Solano1
    • Clea Siguret1
    • Clemens Blank1
    • Dave B.1
    • Ekaterina Polkh1
    • Florian Heyl1
    • Fotis E. Psomopoulos1
    • Graeme Tyson1
    • Hans-Rudolf Hotz1
    • IGC Bioinformatics Unit1
    • James Taylor1
    • John Chilton1
    • José Manuel Domínguez1
    • Kweyakie Afi Blebo1
    • Linelle Abueg1
    • Mateusz Kuzak1
    • Matti Hoch1
    • Mo Heydarian1
    • Peter van Heusden1
    • Peter-Bram 't Hoen1
    • Sanjay Kumar Srikakulam1
    • Simon Bray1
    • Sofoklis Keisaris1
    • Teresa Müller1
    • The Carpentries1
    • Tunc Kayikcioglu1
    • Vlad Visan1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning42
    • slides4
    • Tutorial1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets35
    • Associated Workflows20
    • Quarto/RMarkdown Notebook20
    • git-gat18
    • ansible13
    • jobs5
    • monitoring3
    • deploying2
    • beacon1
    • broken1
    • data1
    • features1
    • ga4gh1
    • storage1
    • tools1
    • training1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Keywords: git-gat or Transcriptomics

47 materials found
  • e-learning

    RNA-Seq data analysis, clustering and visualisation tutorial

    • beginner
    Transcriptomics PCA bulk clustering collections mouse rna-seq work-in-progress
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Network analysis with Heinz

    • beginner
    Transcriptomics metatranscriptomics network analysis
  • e-learning

    Pathway analysis with the MINERVA Platform

    •• intermediate
    Transcriptomics bulk cyoa rna-seq viz
  • e-learning

    RNA Seq Counts to Viz in R

    • beginner
    Transcriptomics interactive-tools
  • e-learning

    Visualization of RNA-Seq results with Volcano Plot in R

    •• intermediate
    Transcriptomics interactive-tools
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    2: RNA-seq counts to genes

    • beginner
    Transcriptomics QC limma-voom mouse
  • e-learning

    3: RNA-seq genes to pathways

    • beginner
    Transcriptomics mouse
  • e-learning

    Customizing the look of Galaxy

    • beginner
    Galaxy Server administration git-gat
  • 1
  • 2
  • 3
  • 4
  • 5
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.