Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Protein structure4
    • Protein structure analysis4
    • Protein tertiary structure4
    • Protein bioinformatics3
    • Protein databases3
    • Protein informatics3
    • Proteins3
    • Structural assignment3
    • Structural biology3
    • Structural determination3
    • Structure determination3
    • Bioinformatics1
    • Chemical biology1
    • DNA structure prediction1
    • Genes1
    • Genetics1
    • Heredity1
    • Nucleic acid design1
    • Nucleic acid folding1
    • Nucleic acid structure prediction1
    • Protein fold recognition1
    • Protein structure prediction1
    • RNA structure prediction1
    • Structure prediction1
    • Show N_FILTERS more
    • Tool
    • Galaxy7
    • SCANPY3
    • anndata3
    • RStudio2
    • Alevin1
    • DropletUtils1
    • Salmon1
    • Show N_FILTERS more
    • Standard database or policy
    • Protein Data Bank in Europe1
    • Protein Data Bank: Proteins, Interfaces, Structures and Assemblies1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training12
    • European Bioinformatics Institute (EBI)8
    • Show N_FILTERS more
    • Keyword
    • paper-replication
    • training64
    • Galaxy Server administration58
    • jupyter-notebook55
    • Foundations of Data Science50
    • biodiversity43
    • data management41
    • Proteomics40
    • Single Cell40
    • microgalaxy39
    • Statistics and machine learning35
    • Transcriptomics29
    • FAIR28
    • Genome Annotation28
    • Contributing to the Galaxy Training Material27
    • Ecology27
    • Rare Diseases & Research27
    • Using Galaxy and Managing your Data27
    • Bioinformatics25
    • Development in Galaxy24
    • Microbiome24
    • Assembly22
    • Data analysis20
    • FAIR data20
    • ansible20
    • data stewardship19
    • genes and genomes19
    • interactive-tools19
    • DNA RNA18
    • FAIR Data, Workflows, and Research18
    • Variant Analysis18
    • git-gat18
    • Teaching and Hosting Galaxy training17
    • elixir17
    • work-in-progress17
    • Python16
    • Roslin Institute16
    • Sequence analysis16
    • jbrowse116
    • life-sciences16
    • reproducibility16
    • Climate15
    • Imaging15
    • Ontologies15
    • fair15
    • transcriptomics15
    • Introduction to Galaxy Analyses14
    • Programming14
    • earth-system14
    • gmod14
    • Data management planning13
    • Babraham Institute13
    • Epigenetics13
    • Proteins13
    • R13
    • Shell13
    • data visualisation13
    • medicine and health13
    • next generation sequencing13
    • programming13
    • prokaryote13
    • EeLP12
    • Metabolomics12
    • eLearning12
    • health-informatics12
    • Chemical biology11
    • Data management plan11
    • Europe PMC11
    • Git11
    • Introduction bioinformatics11
    • MIGHTS11
    • Metadata11
    • ai-ml11
    • biostatistics11
    • cyoa11
    • plants11
    • workflows11
    • Evolution10
    • Extras10
    • Gene Expression10
    • HPC10
    • Introduction10
    • Literature search10
    • Phylogenetics10
    • covid1910
    • eukaryote10
    • label-free10
    • mark ibberson group10
    • services and resources10
    • Computational chemistry9
    • DDA9
    • Genomics9
    • Python biologists9
    • Standards9
    • bioinformatics9
    • computer-science9
    • machine learning9
    • metadata9
    • ocean9
    • one-health9
    • Show N_FILTERS more
    • Difficulty level
    • Beginner12
    • Not specified8
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International12
    • License Not Specified8
    • Show N_FILTERS more
    • Target audience
    • Students12
    • Clinicians8
    • PhD students8
    • Show N_FILTERS more
    • Author
    • Wendi Bacon7
    • Julia Jakiela5
    • Mehmet Tekman3
    • Camila Goclowski2
    • Beatriz Serrano-Solano1
    • Cristóbal Gallardo1
    • Jonathan Manning1
    • Marisa Loach1
    • Morgan Howells1
    • Pavankumar Videm1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning12
    • Helena Rasche12
    • Wendi Bacon12
    • Mehmet Tekman11
    • Pavankumar Videm11
    • Saskia Hiltemann11
    • Julia Jakiela9
    • Pablo Moreno5
    • Marisa Loach4
    • Beatriz Serrano-Solano2
    • Camila Goclowski2
    • David López2
    • Jonathan Manning2
    • Martin Čech2
    • Matthias Bernt2
    • Teresa Müller2
    • Amirhossein Naghsh Nilchi1
    • Bérénice Batut1
    • Show N_FILTERS more
    • Resource type
    • e-learning20
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets11
    • Associated Workflows7
    • Jupyter Notebook (with Solutions)3
    • Jupyter Notebook (without Solutions)3
    • Quarto/RMarkdown Notebook2
    • Show N_FILTERS more
    • Node
    • EMBL-EBI8
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Keywords: paper-replication or PDBe

20 materials found
  • e-learning

    Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

    • beginner
    MIGHTS Single Cell jupyter-notebook paper-replication
  • e-learning

    Inferring single cell trajectories with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Filter, plot, and explore single cell RNA-seq data with Seurat

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Generating a single cell matrix using Alevin and combining datasets (bash + R)

    • beginner
    10x MIGHTS Single Cell jupyter-notebook paper-replication
  • e-learning

    Generating a single cell matrix using Alevin

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Combining single cell datasets after pre-processing

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Filter, plot, and explore single cell RNA-seq data with Seurat (R)

    • beginner
    MIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook
  • e-learning

    Filter, plot and explore single-cell RNA-seq data with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Inferring single cell trajectories with Scanpy (Python)

    • beginner
    MIGHTS Single Cell jupyter-notebook paper-replication
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • 1
  • 2
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.