Training materials
Tools: UniProt
and Scientific topics: Microbial ecology
and Licence: Creative Commons Attribution 4.0 International
2 materials found
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Scientific topic
- Microbial ecology
- Bottom-up proteomics2
- Community analysis2
- Discovery proteomics2
- Environmental microbiology2
- MS-based targeted proteomics2
- MS-based untargeted proteomics2
- Metagenomics2
- Metaproteomics2
- Microbiome2
- Molecular community analysis2
- Peptide identification2
- Protein and peptide identification2
- Proteomics2
- Quantitative proteomics2
- Shotgun metagenomics2
- Targeted proteomics2
- Top-down proteomics2
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Tool
- UniProt
- Galaxy26
- taxonomy_krona_chart9
- FastQC7
- kraken26
- MetaPhlAn5
- Cutadapt4
- HUMAnN24
- KrakenTools4
- MultiQC4
- fastp4
- Bracken3
- GraPhlAn3
- Newick Utilities3
- SortMeRNA3
- export2graphlan3
- humann3
- mothur3
- BamTools2
- Bandage2
- MEGAHIT2
- MaxQuant2
- Minimap22
- NanoPlot2
- Recentrifuge2
- ggplot22
- metaQuantome2
- ABRicate1
- BCFtools1
- BEDTools1
- Bowtie 21
- CheckM1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- DISEASES1
- EXTRACT1
- FastTree1
- Flye1
- Krona1
- MLST1
- MSstats1
- Medaka1
- MetaNovo1
- NGSUtils1
- ORGANISMS1
- QUAST1
- Racon1
- SAMtools1
- Unicycler1
- Unipept1
- dada21
- lotus21
- metaspades1
- miniasm1
- msConvert1
- phyloseq1
- seqtk1
- staramr1
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Content provider
- Galaxy Training2
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Difficulty level
- Beginner2
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Target audience
- Students2
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Contributor
- Pratik Jagtap2
- Timothy J. Griffin2
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Resource type
- e-learning2
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Related resource
- Associated Training Datasets2
- Associated Workflows2
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