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• • Scientific topic
  • Protein bioinformatics27
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  • Expression8
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• • Operation
  • Sequence generation1
  • Sequence generation (nucleic acid)1
  • Sequence generation (protein)1
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• • Tool
  • MGnify (was EBI Metagenomics)3
  • Ontology Lookup Service3
  • Zooma2
  • BioRuby1
  • ChEBI1
  • MGnify1
  • REDCap1
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• • Standard database or policy
  • Ensembl8
  • Protein Data Bank in Europe5
  • European Nucleotide Archive4
  • ChEMBL: a large-scale bioactivity database for drug discovery3
  • IntAct molecular interaction database3
  • ArrayExpress2
  • EBI Metagenomics2
  • Integrated resource of protein families, domains and functional sites2
  • OBO Foundry2
  • A repository of mathematical models of biological and biomedical systems1
  • Cellular Microscopy Phenotype Ontology1
  • Europe PubMed Central1
  • Expression Atlas1
  • Gene Ontology1
  • MetaboLights1
  • PRoteomics IDEntifications database1
  • Protein Data Bank: Proteins, Interfaces, Structures and Assemblies1
  • ProteomeXchange1
  • PubMed Central1
  • Resource Description Framework1
  • The European Genome-phenome Archive1
  • Variant Effect Predictor data format1
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• • Content provider
  • European Bioinformatics Institute (EBI)447
  • CINECA PROJECT14
  • ELIXIR1
  • ELIXIR-SI eLearning Platform (EeLP)1
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• • Keyword
  • DNA RNA17
  • Ontologies14
  • Europe PMC11
  • Proteins11
  • Chemical biology10
  • Literature search10
  • Gene Expression9
  • Introduction9
  • Biomedical Literature8
  • PDBe8
  • Protein families7
  • Genome sequencing6
  • Sequence alignments6
  • Structures6
  • Variants6
  • Network analysis5
  • Programmatic access5
  • Small molecules5
  • Standards5
  • Systems5
  • Systems biology5
  • Text mining4
  • Cross domain4
  • Gene transcripts4
  • Macromolecular structures4
  • Metadata4
  • Microarray4
  • data harmonization4
  • Annotation3
  • API3
  • Chemical compounds3
  • Cohort data3
  • Data integration3
  • Data links3
  • Data management3
  • EOSC-Life3
  • EVA3
  • HMMs3
  • MGnify3
  • Metabolites3
  • Metabolome3
  • Metagenomics3
  • Microbiology3
  • Open access3
  • Pathway database3
  • Profile Hidden Markov models3
  • Protein classification3
  • Protein function3
  • Annotations2
  • BioMart2
  • Biocuration2
  • Biocurators2
  • Biomedical data2
  • Controlled vocabulary2
  • Data standards2
  • ELSI2
  • Ethics2
  • Europe PMC, Preprints2
  • FAIR2
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  • Functional annotation2
  • GWAS2
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  • Human genetic variation2
  • IMPC2
  • Literature2
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  • NGS2
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  • Open science2
  • Phylogenetic profiling2
  • Protein sequences2
  • Protein signature models2
  • Protein-protein interaction networks2
  • Python2
  • R2
  • REST API2
  • Sequence Analysis2
  • Standardised vocabulary2
  • Swiss-Prot2
  • TrEMBL2
  • UniProtKB2
  • federated data analysis2
  • metadata2
  • ncRNA2
  • Beacon queries1
  • AAI 1
  • AMR1
  • ArrayExpress1
  • Artificial intelligence1
  • Auhtorisation1
  • Bacteria1
  • Biobanking1
  • Biochemical pathways1
  • Bioimaging1
  • Bioinformatic analysis1
  • Bioinformatic databases1
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• • Difficulty level
  • Not specified445
  • Beginner13
  • Intermediate6
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• • Licence
  • License Not Specified439
  • Creative Commons Attribution Non Commercial Share Alike 4.0 International13
  • Creative Commons Attribution Share Alike 4.0 International10
  • BSD 3-Clause "New" or "Revised" License1
  • Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
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• • Target audience
  • Clinicians103
  • PhD students103
  • Life Science Researchers3
  • Life Scientists3
  • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
  • Beginners2
  • biocurators2
  • life scientists2
  • software developers, bioinformaticians2
  • Researchers1
  • Scientists1
  • Scientists who want to optimise their literature searches1
  • Software developers1
  • This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.1
  • Training providers1
  • Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.1
  • bioinformaticians1
  • programmers1
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• • Author
  • Maria Levchenko8
  • Dayane Araujo6
  • Marta Lloret Llinares5
  • Emma Griffiths4
  • Alex Mitchell2
  • Rob Finn2
  • Aleksandra Nenadic1
  • Aravind Venkatesan1
  • Carlos Martinez Ortiz1
  • Carole A Goble1
  • Dalia Alghamdi1
  • Denise Carvalho-Silva1
  • Ewan Birney1
  • Finn Bacall1
  • Francesco Talo1
  • Frédéric Haziza1
  • Guillermo Rangel Pineros1
  • Henriette Harmse1
  • Jonathan Dursi1
  • Jordi Rambla1
  • Kees van Bochove1
  • Keeva Cochrane1
  • Kirill Tsukanov1
  • Lorna Richardson1
  • Magnus Palmblad1
  • Marta Teperek1
  • Melissa Burke1
  • Michael Crusoe1
  • Michaela Th. Mayrhofer1
  • Mikael Linden1
  • Milo Thurston1
  • Namrata Kale1
  • Nancy George1
  • Niall Beard1
  • Ola Tarkowska1
  • Pablo Moreno1
  • Rebecca Campos1
  • Rob Hooft1
  • Sarah Jones1
  • Sijin He1
  • Simon Jupp1
  • Sirarat Sarntivijai1
  • Susanna-Assunta Sansone1
  • Teresa K Attwood1
  • Tony Burdett1
  • Varsha Kale1
  • Will Hsiao1
  • Yasemin Türkyilmaz-van der Velden1
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• • Contributor
  • Michael Parkin3
  • Alex Mitchell2
  • Rob Finn2
  • Aitor Apaolaza 1
  • Alvaro Gonzalez1
  • Aravind Venkatesan1
  • Chris Child1
  • Daan van Vugt1
  • Elisabeth Busch1
  • Finn Bacall1
  • Francesco Talo1
  • Guillermo Rangel Pineros1
  • Lorna Richardson1
  • Michael Crusoe1
  • Milo Thurston1
  • Niall Beard1
  • Nick May1
  • Ola Tarkowska1
  • Rebecca Campos1
  • Stefan Negru1
  • Teemu Kataja1
  • Varsha Kale1
  • Yogmatee Rochun1
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• • Resource type
  • Recorded webinar233
  • e-learning99
  • Course materials41
  • Video17
  • Webinar13
  • Online tutorial4
  • Life Sciences Literature Database2
  • Tutorial2
  • Series of videos1
  • Installation instructions1
  • Manual1
  • Slides1
  • Training materials1
  • hands-on tutorial1
  • slides1
  • test?1
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• • Related resource
  • CanCOGeN1
  • GEEM1
  • Galaxy project guided tours1
  • Next generation biobanking ontology (NGBO)1
  • Public Health Alliance for Genomic Epidemiology1
  • TeSS GitHub1
  • TeSS Redesign Figma 1
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• • Node
  • EMBL-EBI
  • United Kingdom66
  • Netherlands57
  • Switzerland30
  • Belgium23
  • Portugal21
  • Finland19
  • France14
  • Czech Republic11
  • Slovenia11
  • Norway10
  • Luxembourg8
  • Spain8
  • Denmark5
  • Sweden4
  • Germany3
  • Greece2
  • Italy2
  • Estonia1
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• • Collection
  • Testing 1231
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• • Status
  • Under development1
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• • Date added
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