Materials - TeSS Sandbox (Training eSupport System)

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- Scientific topic
- Protein bioinformatics27
- Protein databases27
- Protein informatics27
- Proteins27
- Protein structure20
- Protein structure analysis20
- Protein tertiary structure20
- Data management18
- Metadata management18
- Research data management (RDM)18
- Biomathematics17
- Computational biology17
- Mathematical biology17
- Theoretical biology17
- Community analysis15
- Environmental microbiology15
- Microbial ecology15
- Microbiome15
- Molecular community analysis15
- Molecular diagnostics15
- Personalised medicine15
- Precision medicine15
- Bioinformatics14
- Data archival14
- Data archiving14
- Data curation14
- Data curation and archival14
- Data preservation14
- Database curation14
- Research data archiving14
- Antimicrobial stewardship13
- Chemical biology13
- Function analysis13
- Functional analysis13
- Medical microbiology13
- Microbial genetics13
- Microbial physiology13
- Microbial surveillance13
- Microbiological surveillance13
- Microbiology13
- Molecular infection biology13
- Molecular microbiology13
- Protein function analysis13
- Protein function prediction13
- Bibliography11
- Citations11
- Documentation11
- Genotype11
- Genotype and phenotype11
- Genotype and phenotype resources11
- Genotype-phenotype11
- Genotype-phenotype analysis11
- Genotyping11
- Language11
- Literature11
- Literature and language11
- Metagenomics11
- Phenotype11
- Phenotyping11
- References11
- Scientific literature11
- Shotgun metagenomics11
- Exomes10
- Exometabolomics10
- Genome annotation10
- Genomes10
- Genomics10
- LC-MS-based metabolomics10
- MS-based metabolomics10
- MS-based targeted metabolomics10
- MS-based untargeted metabolomics10
- Mass spectrometry-based metabolomics10
- Metabolites10
- Metabolome10
- Metabolomics10
- Metabonomics10
- NMR-based metabolomics10
- Personal genomics10
- Synthetic genomics10
- Viral genomics10
- Whole genomes10
- DNA variation9
- Genes9
- Genetic variation9
- Genetics9
- Genomic variation9
- Heredity9
- Mutation9
- Polymorphism9
- Somatic mutations9
- Codon usage8
- Comparative transcriptomics8
- Content management8
- DNA chips8
- DNA microarrays8
- Database management8
- Document management8
- Drug discovery8
- Expression8
- File management8
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- Operation
- Sequence generation1
- Sequence generation (nucleic acid)1
- Sequence generation (protein)1
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- Tool
- MGnify (was EBI Metagenomics)3
- Ontology Lookup Service3
- Zooma2
- BioRuby1
- ChEBI1
- MGnify1
- REDCap1
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- Standard database or policy
- Ensembl8
- Protein Data Bank in Europe5
- European Nucleotide Archive4
- ChEMBL: a large-scale bioactivity database for drug discovery3
- IntAct molecular interaction database3
- ArrayExpress2
- EBI Metagenomics2
- Integrated resource of protein families, domains and functional sites2
- OBO Foundry2
- A repository of mathematical models of biological and biomedical systems1
- Cellular Microscopy Phenotype Ontology1
- Europe PubMed Central1
- Expression Atlas1
- Gene Ontology1
- MetaboLights1
- PRoteomics IDEntifications database1
- Protein Data Bank: Proteins, Interfaces, Structures and Assemblies1
- ProteomeXchange1
- PubMed Central1
- Resource Description Framework1
- The European Genome-phenome Archive1
- Variant Effect Predictor data format1
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- Content provider
- European Bioinformatics Institute (EBI)449
- CINECA PROJECT14
- ELIXIR1
- ELIXIR-SI eLearning Platform (EeLP)1
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- Keyword
- DNA RNA17
- Ontologies14
- Europe PMC11
- Proteins11
- Chemical biology10
- Introduction10
- Literature search10
- Gene Expression9
- Biomedical Literature8
- PDBe8
- Protein families7
- Genome sequencing6
- Sequence alignments6
- Structures6
- Variants6
- Network analysis5
- Programmatic access5
- Small molecules5
- Standards5
- Systems5
- Systems biology5
- Text mining4
- Cross domain4
- Gene transcripts4
- Macromolecular structures4
- Metadata4
- Microarray4
- data harmonization4
- Annotation3
- API3
- Chemical compounds3
- Cohort data3
- Data integration3
- Data links3
- Data management3
- EOSC-Life3
- EVA3
- HMMs3
- MGnify3
- Metabolites3
- Metabolome3
- Metagenomics3
- Microbiology3
- Open access3
- Pathway database3
- Profile Hidden Markov models3
- Protein classification3
- Protein function3
- Annotations2
- BioMart2
- Biocuration2
- Biocurators2
- Biomedical data2
- Controlled vocabulary2
- Data standards2
- ELSI2
- Ethics2
- Europe PMC, Preprints2
- FAIR2
- FAIR data2
- Functional annotation2
- GWAS2
- Galaxy2
- Human genetic variation2
- IMPC2
- Literature2
- Microscopy2
- Multiple sequence alignments2
- NGS2
- NMR spectroscopy2
- Next-generation sequencing2
- Open Targets2
- Open science2
- Phylogenetic profiling2
- Protein sequences2
- Protein signature models2
- Protein-protein interaction networks2
- Python2
- R2
- REST API2
- Sequence Analysis2
- Standardised vocabulary2
- Swiss-Prot2
- TrEMBL2
- UniProtKB2
- federated data analysis2
- metadata2
- ncRNA2
- Beacon queries1
- AAI 1
- AMR1
- ArrayExpress1
- Artificial intelligence1
- Auhtorisation1
- Bacteria1
- Biobanking1
- Biochemical pathways1
- Bioimaging1
- Bioinformatic analysis1
- Bioinformatic databases1
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- Difficulty level
- Not specified447
- Beginner13
- Intermediate6
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- Licence
- License Not Specified441
- Creative Commons Attribution Non Commercial Share Alike 4.0 International13
- Creative Commons Attribution Share Alike 4.0 International10
- BSD 3-Clause "New" or "Revised" License1
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
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- Target audience
- Clinicians103
- PhD students103
- Life Science Researchers3
- Life Scientists3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Beginners2
- biocurators2
- life scientists2
- software developers, bioinformaticians2
- Researchers1
- Scientists1
- Scientists who want to optimise their literature searches1
- Software developers1
- This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.1
- Training providers1
- Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.1
- bioinformaticians1
- programmers1
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- Author
- Maria Levchenko8
- Dayane Araujo6
- Marta Lloret Llinares5
- Emma Griffiths4
- Alex Mitchell2
- Rob Finn2
- Aleksandra Nenadic1
- Aravind Venkatesan1
- Carlos Martinez Ortiz1
- Carole A Goble1
- Dalia Alghamdi1
- Denise Carvalho-Silva1
- Ewan Birney1
- Finn Bacall1
- Francesco Talo1
- Frédéric Haziza1
- Guillermo Rangel Pineros1
- Henriette Harmse1
- Jonathan Dursi1
- Jordi Rambla1
- Kees van Bochove1
- Keeva Cochrane1
- Kirill Tsukanov1
- Lorna Richardson1
- Magnus Palmblad1
- Marta Teperek1
- Melissa Burke1
- Michael Crusoe1
- Michaela Th. Mayrhofer1
- Mikael Linden1
- Milo Thurston1
- Namrata Kale1
- Nancy George1
- Niall Beard1
- Ola Tarkowska1
- Pablo Moreno1
- Rebecca Campos1
- Rob Hooft1
- Sarah Jones1
- Sijin He1
- Simon Jupp1
- Sirarat Sarntivijai1
- Susanna-Assunta Sansone1
- Teresa K Attwood1
- Tony Burdett1
- Varsha Kale1
- Will Hsiao1
- Yasemin Türkyilmaz-van der Velden1
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- Contributor
- Michael Parkin3
- Alex Mitchell2
- Rob Finn2
- Aitor Apaolaza 1
- Alvaro Gonzalez1
- Aravind Venkatesan1
- Chris Child1
- Daan van Vugt1
- Elisabeth Busch1
- Finn Bacall1
- Francesco Talo1
- Guillermo Rangel Pineros1
- Lorna Richardson1
- Michael Crusoe1
- Milo Thurston1
- Niall Beard1
- Nick May1
- Ola Tarkowska1
- Rebecca Campos1
- Stefan Negru1
- Teemu Kataja1
- Varsha Kale1
- Yogmatee Rochun1
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- Resource type
- Recorded webinar234
- e-learning100
- Course materials42
- Video17
- Webinar13
- Online tutorial3
- Life Sciences Literature Database2
- Tutorial2
- Series of videos1
- Installation instructions1
- Manual1
- Slides1
- Training materials1
- hands-on tutorial1
- slides1
- test?1
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- Related resource
- CanCOGeN1
- GEEM1
- Galaxy project guided tours1
- Next generation biobanking ontology (NGBO)1
- Public Health Alliance for Genomic Epidemiology1
- TeSS GitHub1
- TeSS Redesign Figma 1
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- Node
- EMBL-EBI
- Netherlands55
- United Kingdom53
- Switzerland28
- Belgium23
- Portugal21
- Finland15
- France12
- Slovenia11
- Czech Republic10
- Norway9
- Luxembourg8
- Spain7
- Denmark4
- Sweden4
- Germany3
- Greece2
- Italy2
- Estonia1
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- Collection
- Testing 1231
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- Status
- Under development1
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