Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly6
    • Sequence assembly6
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Personal genomics5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Antimicrobial stewardship4
    • Biological sequences4
    • Community analysis4
    • DNA variation4
    • Environmental microbiology4
    • Epidemiology4
    • Genetic variation4
    • Genomic variation4
    • Medical microbiology4
    • Microbial ecology4
    • Microbial genetics4
    • Microbial physiology4
    • Microbial surveillance4
    • Microbiological surveillance4
    • Microbiology4
    • Microbiome4
    • Molecular community analysis4
    • Molecular infection biology4
    • Molecular microbiology4
    • Mutation4
    • Polymorphism4
    • Public health4
    • Public health and epidemiology4
    • Sequence analysis4
    • Sequence databases4
    • Somatic mutations4
    • De novo genome sequencing3
    • Genome sequencing3
    • Metagenomics3
    • Shotgun metagenomics3
    • Taxonomy3
    • WGS3
    • Whole genome resequencing3
    • Whole genome sequencing3
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Biodiversity1
    • Communicable disease1
    • Comparative transcriptomics1
    • Computational ecology1
    • DNA metabarcoding1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Extensive drug resistance (XDR)1
    • Infectious disease1
    • Metabarcoding1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • RNA metabarcoding1
    • Total drug resistance (TDR)1
    • Transcriptome1
    • Transcriptomics1
    • Transmissible disease1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy295
    • FastQC26
    • SAMtools23
    • BWA19
    • MultiQC19
    • SCANPY14
    • BEDTools13
    • BLAST11
    • Cutadapt11
    • JBrowse11
    • scikit-learn11
    • DeepTools10
    • ggplot210
    • Falco9
    • FreeBayes9
    • QUAST9
    • BUSCO8
    • GEMINI8
    • STAR8
    • Trimmomatic8
    • kraken28
    • taxonomy_krona_chart8
    • BCFtools7
    • Galaxy Image Analysis7
    • HISAT27
    • NanoPlot7
    • msConvert7
    • scikit-image7
    • BamTools6
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • RStudio6
    • seqtk6
    • FASTX-Toolkit5
    • Flye5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • Workflow4Metabolomics5
    • annotatemyids5
    • compute_sequence_length5
    • Bowtie 24
    • Bwa-mem24
    • Data Stewardship Wizard4
    • Diamond4
    • GOseq4
    • Galactic Circos4
    • KrakenTools4
    • MSstats4
    • MetaPhlAn4
    • Newick Utilities4
    • RSeQC4
    • SRA Software Toolkit4
    • StringTie4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • anndata4
    • gffcompare4
    • gffread4
    • mothur4
    • xcms4
    • Bracken3
    • Cardinal3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • HUMAnN23
    • InterProScan (EBI)3
    • MACS3
    • Merqury3
    • QualiMap3
    • RDKit3
    • Salmon3
    • Stacks3
    • Trim Galore3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • bx-python3
    • customProDB3
    • gfastats3
    • iqtree3
    • lofreq3
    • snippy3
    • snpEff3
    • Apollo2
    • Bakta2
    • Bio3D2
    • COMBAT-TB Workbench2
    • CellProfiler2
    • ChEMBL2
    • CheckM2
    • Circos2
    • Clustal 1.8 (Clustal W, Clustal X)2
    • DESeq22
    • FeatureCounts2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training16
    • Show N_FILTERS more
    • Keyword
    • microgalaxy7
    • Assembly4
    • Variant Analysis4
    • nanopore4
    • one-health4
    • Microbiome3
    • assembly3
    • biodiversity3
    • virology3
    • Introduction to Galaxy Analyses2
    • covid192
    • illumina2
    • plants2
    • 16S1
    • Ecology1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • Transcriptomics1
    • alternative splicing1
    • amr1
    • bacteria1
    • beer1
    • citizen science1
    • cyoa1
    • isoform switching1
    • metabarcoding1
    • metagenomics1
    • polishing1
    • prokaryote1
    • tuberculosis1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner11
    • Intermediate3
    • Advanced2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International16
    • Show N_FILTERS more
    • Target audience
    • Students16
    • Show N_FILTERS more
    • Author
    • Bérénice Batut5
    • Anton Nekrutenko3
    • Wolfgang Maier3
    • Bazante Sanders2
    • Cristóbal Gallardo2
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Anna Syme1
    • Clea Siguret1
    • Engy Nasr1
    • John Beliveau1
    • Lucille Delisle1
    • Paul Zierep1
    • Peter van Heusden1
    • Polina Polunina1
    • Simon Gladman1
    • Siyu Chen1
    • Teresa Müller1
    • Thoba Lose1
    • Tomas Klingström1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann16
    • Helena Rasche13
    • Björn Grüning11
    • Bérénice Batut11
    • Wolfgang Maier9
    • Cristóbal Gallardo8
    • Anton Nekrutenko5
    • Deepti Varshney4
    • Teresa Müller4
    • Anthony Bretaudeau3
    • Nate Coraor3
    • Bazante Sanders2
    • Miaomiao Zhou2
    • Mélanie Petera2
    • Nicola Soranzo2
    • Verena Moosmann2
    • Anna Syme1
    • Armin Dadras1
    • Beatriz Serrano-Solano1
    • Clea Siguret1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • John Beliveau1
    • John Davis1
    • Linelle Abueg1
    • Lucille Delisle1
    • Matúš Kalaš1
    • Mehmet Tekman1
    • Niall Beard1
    • Nuwan Goonasekera1
    • Paul Zierep1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Simon Gladman1
    • Siyu Chen1
    • Willem de Koning1
    • William Durand1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows14
    • Associated Training Datasets13
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Resource type: e-learning

and Tools: fastp

16 e-learning materials found
  • e-learning

    Pox virus genome analysis from tiled-amplicon sequencing data

    ••• advanced
    Genetic variation Variant Analysis one-health virology
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• intermediate
    Sequence assembly Assembly biodiversity covid19
  • e-learning

    Very Short Introductions: QC

    • beginner
    Introduction to Galaxy Analyses
  • e-learning

    NGS data logistics

    • beginner
    Introduction to Galaxy Analyses
  • 1
  • 2
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.