Training materials
Scientific topics: Sequence assembly
and Related resources: Associated Training Datasets
22 materials found
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Scientific topic
- Sequence assembly
- Exomes43
- Genome annotation43
- Genomes43
- Genomics43
- Personal genomics43
- Synthetic genomics43
- Viral genomics43
- Whole genomes43
- Bottom-up proteomics36
- Discovery proteomics36
- MS-based targeted proteomics36
- MS-based untargeted proteomics36
- Metaproteomics36
- Peptide identification36
- Protein and peptide identification36
- Proteomics36
- Quantitative proteomics36
- Targeted proteomics36
- Top-down proteomics36
- Biological sequences31
- Sequence analysis31
- Sequence databases31
- Comparative transcriptomics26
- Transcriptome26
- Transcriptomics26
- Bayesian methods24
- Biostatistics24
- Descriptive statistics24
- Gaussian processes24
- Inferential statistics24
- Markov processes24
- Multivariate statistics24
- Probabilistic graphical model24
- Probability24
- Statistics24
- Statistics and probability24
- Antimicrobial stewardship22
- Assembly22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- Community analysis20
- Environmental microbiology20
- Microbial ecology20
- Microbiome20
- Molecular community analysis20
- Metagenomics19
- Shotgun metagenomics19
- Computational ecology14
- Ecoinformatics14
- Ecological informatics14
- Ecology14
- Ecosystem science14
- Algorithms13
- Computer programming13
- Data structures13
- Programming languages13
- Software development13
- Software engineering13
- Taxonomy13
- DNA variation12
- Genetic variation12
- Genomic variation12
- Mutation12
- Polymorphism12
- Somatic mutations12
- Epigenomics11
- Diffraction experiment10
- Evolution10
- Evolutionary biology10
- Exometabolomics10
- Imaging10
- LC-MS-based metabolomics10
- MS-based metabolomics10
- MS-based targeted metabolomics10
- MS-based untargeted metabolomics10
- Mass spectrometry-based metabolomics10
- Metabolites10
- Metabolome10
- Metabolomics10
- Metabonomics10
- Microscopy10
- Microscopy imaging10
- NMR-based metabolomics10
- Optical super resolution microscopy10
- Photonic force microscopy10
- Photonic microscopy10
- Biodiversity9
- Computational chemistry7
- De novo genome sequencing6
- Epidemiology6
- Genome sequencing6
- Public health6
- Public health and epidemiology6
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Tool
- Galaxy22
- QUAST9
- FastQC8
- fastp6
- BUSCO5
- Bandage5
- NanoPlot5
- Flye4
- MultiQC4
- BEDTools3
- BamTools3
- Merqury3
- Minimap23
- SAMtools3
- kraken23
- BCFtools2
- BWA2
- Bwa-mem22
- Cutadapt2
- GenomeScope 2.02
- JBrowse2
- MEGAHIT2
- Medaka2
- Unicycler2
- gfastats2
- seqtk2
- snippy2
- ABRicate1
- BLAST1
- Bowtie 21
- COMBAT-TB Workbench1
- CheckM1
- Circos1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- Falco1
- FastTree1
- Filtlong1
- FreeBayes1
- Galactic Circos1
- Jvarkit1
- KrakenTools1
- MLST1
- NGSUtils1
- Newick Utilities1
- OMArk1
- Polypolish1
- QualiMap1
- Racon1
- SALSA1
- SPAdes1
- STAR1
- Vcflib1
- VelvetOptimiser1
- compute_sequence_length1
- gffread1
- ggplot21
- metaspades1
- pilon1
- purge_dups1
- shovill1
- taxonomy_krona_chart1
- tb-profiler1
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Content provider
- Galaxy Training22
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Keyword
- Assembly16
- biodiversity10
- microgalaxy10
- assembly5
- prokaryote5
- jbrowse14
- Variant Analysis3
- nanopore3
- Microbiome2
- VGP2
- eukaryote2
- gmod2
- metagenomics2
- pacbio2
- plants2
- Braker31
- Genome Annotation1
- Heatmap1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- amr1
- binning1
- covid191
- cyoa1
- eukaryota1
- illumina1
- one-health1
- polishing1
- quality control1
- tuberculosis1
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Difficulty level
- Beginner16
- Intermediate6
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Target audience
- Students22
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Author
- Delphine Lariviere6
- Anton Nekrutenko5
- Simon Gladman5
- Anna Syme4
- Bérénice Batut4
- Alex Ostrovsky3
- Anthony Bretaudeau3
- Alexandre Cormier2
- Bazante Sanders2
- Brandon Pickett2
- Cristóbal Gallardo2
- Erwan Corre2
- Helena Rasche2
- Laura Leroi2
- Linelle Abueg2
- Stéphanie Robin2
- Christophe Klopp1
- Engy Nasr1
- Fotis E. Psomopoulos1
- Giulio Formenti1
- Marcella Sozzoni1
- Nikos Pechlivanis1
- Paul Zierep1
- Peter van Heusden1
- Polina Polunina1
- Romane LIBOUBAN1
- Saskia Hiltemann1
- Thoba Lose1
- Torsten Seemann1
- Wolfgang Maier1
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Contributor
- Bérénice Batut21
- Saskia Hiltemann21
- Helena Rasche19
- Björn Grüning17
- Cristóbal Gallardo11
- Anthony Bretaudeau9
- Deepti Varshney7
- Niall Beard6
- Nicola Soranzo6
- Anna Syme5
- Anton Nekrutenko5
- Teresa Müller5
- Delphine Lariviere4
- Maria Doyle4
- Simon Gladman4
- William Durand4
- Wolfgang Maier4
- Gildas Le Corguillé3
- Linelle Abueg3
- Alexandre Cormier2
- Bazante Sanders2
- Miaomiao Zhou2
- Mélanie Petera2
- Nate Coraor2
- Peter van Heusden2
- Alex Ostrovsky1
- Engy Nasr1
- Enis Afgan1
- Hans-Rudolf Hotz1
- Jennifer Hillman-Jackson1
- Marius van den Beek1
- Matúš Kalaš1
- Nikos Pechlivanis1
- Paul Zierep1
- Polina Polunina1
- Solenne Correard1
- Verena Moosmann1
- Vijay1
- pimarin1
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Resource type
- e-learning21
- slides1
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