Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Shotgun metagenomics
    • Data management105
    • Metadata management105
    • Research data management (RDM)105
    • Algorithms89
    • Computer programming89
    • Data structures89
    • Programming languages89
    • Software development89
    • Software engineering89
    • Exomes63
    • Genome annotation63
    • Genomes63
    • Genomics63
    • Personal genomics63
    • Synthetic genomics63
    • Viral genomics63
    • Whole genomes63
    • Bottom-up proteomics58
    • Discovery proteomics58
    • MS-based targeted proteomics58
    • MS-based untargeted proteomics58
    • Metaproteomics58
    • Peptide identification58
    • Protein and peptide identification58
    • Proteomics58
    • Quantitative proteomics58
    • Targeted proteomics58
    • Top-down proteomics58
    • Bayesian methods47
    • Biostatistics47
    • Descriptive statistics47
    • Gaussian processes47
    • Inferential statistics47
    • Markov processes47
    • Multivariate statistics47
    • Probabilistic graphical model47
    • Probability47
    • Statistics47
    • Statistics and probability47
    • FAIR data44
    • Findable, accessible, interoperable, reusable data44
    • Biological sequences41
    • Sequence analysis41
    • Sequence databases41
    • Community analysis39
    • Comparative transcriptomics39
    • Environmental microbiology39
    • Microbial ecology39
    • Microbiome39
    • Molecular community analysis39
    • Transcriptome39
    • Transcriptomics39
    • Metagenomics37
    • Antimicrobial stewardship36
    • Medical microbiology36
    • Microbial genetics36
    • Microbial physiology36
    • Microbial surveillance36
    • Microbiological surveillance36
    • Microbiology36
    • Molecular infection biology36
    • Molecular microbiology36
    • Bioinformatics31
    • DNA variation30
    • Genetic variation30
    • Genomic variation30
    • Mutation30
    • Polymorphism30
    • Somatic mutations30
    • Assembly28
    • Rare diseases28
    • Sequence assembly28
    • Computational ecology27
    • Ecoinformatics27
    • Ecological informatics27
    • Ecology27
    • Ecosystem science27
    • Protein bioinformatics26
    • Protein databases26
    • Protein informatics26
    • Proteins26
    • Biomathematics25
    • Computational biology25
    • Mathematical biology25
    • Protein structure25
    • Protein structure analysis25
    • Protein tertiary structure25
    • Theoretical biology25
    • Exometabolomics22
    • LC-MS-based metabolomics22
    • MS-based metabolomics22
    • MS-based targeted metabolomics22
    • MS-based untargeted metabolomics22
    • Mass spectrometry-based metabolomics22
    • Metabolites22
    • Metabolome22
    • Metabolomics22
    • Metabonomics22
    • NMR-based metabolomics22
    • Show N_FILTERS more
    • Tool
    • Galaxy19
    • taxonomy_krona_chart9
    • FastQC6
    • MetaPhlAn5
    • Cutadapt4
    • HUMAnN24
    • KrakenTools4
    • MultiQC4
    • kraken24
    • GraPhlAn3
    • Newick Utilities3
    • SortMeRNA3
    • export2graphlan3
    • fastp3
    • humann3
    • mothur3
    • BamTools2
    • Bandage2
    • MEGAHIT2
    • MGnify (was EBI Metagenomics)2
    • Minimap22
    • NanoPlot2
    • ggplot22
    • metaQuantome2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bowtie 21
    • Bracken1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DISEASES1
    • EXTRACT1
    • FastTree1
    • Flye1
    • Krona1
    • MGnify1
    • MLST1
    • Medaka1
    • NGSUtils1
    • ORGANISMS1
    • QUAST1
    • Racon1
    • SAMtools1
    • Unicycler1
    • dada21
    • lotus21
    • metaspades1
    • miniasm1
    • phyloseq1
    • seqtk1
    • staramr1
    • Show N_FILTERS more
    • Standard database or policy
    • EBI Metagenomics1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training22
    • European Bioinformatics Institute (EBI)11
    • GOBLET2
    • ELIXIR Norway1
    • Novo Nordisk Foundation Center for Protein Research1
    • Show N_FILTERS more
    • Keyword
    • Microbiome19
    • microgalaxy17
    • metagenomics6
    • 16S5
    • Metagenomics5
    • metabarcoding5
    • MGnify3
    • Microbiology3
    • diversity3
    • nanopore3
    • taxonomic profiling3
    • Proteomics2
    • Sequence Analysis2
    • assembly2
    • metatranscriptomics2
    • Assembly1
    • DNA RNA1
    • EeLP1
    • Environmental DNA1
    • Heatmap1
    • Marine Metagenomics1
    • Metabolites1
    • Metabolome1
    • Nanopore data analysis1
    • Open access1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • Small molecules1
    • amr1
    • beer1
    • binning1
    • citizen science1
    • cyoa1
    • eDNA1
    • eLearning1
    • ecology1
    • fungi1
    • microbial ecosystems1
    • microbiome1
    • plants1
    • plasmids1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner20
    • Not specified14
    • Intermediate3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International23
    • License Not Specified10
    • Creative Commons Attribution Non Commercial Share Alike 4.0 International3
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students22
    • PhD students4
    • Clinicians3
    • Life Scientists3
    • PhD2
    • Bioinformaticians1
    • Biologists1
    • Master students1
    • Researchers1
    • post-docs1
    • postdocs1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut13
    • Saskia Hiltemann8
    • Paul Zierep5
    • Pratik Jagtap5
    • Subina Mehta5
    • Emma Leith4
    • Praveen Kumar4
    • Alex Mitchell2
    • Dave Clements2
    • Engy Nasr2
    • Marie Crane2
    • Polina Polunina2
    • QIIME22
    • Ray Sajulga2
    • Sophia Hampe2
    • Timothy J. Griffin2
    • Cristóbal Gallardo1
    • Didier Debroas1
    • Erik Hjerde1
    • Espen Aberg1
    • Espen Mikal Robertsen1
    • Evangelos Pafilis1
    • Fotis E. Psomopoulos1
    • Guillermo Rangel Pineros1
    • Lars Juhl Jensen1
    • Lorna Richardson1
    • Maria Victoria ...1
    • Nadia Goué1
    • Nikos Pechlivanis1
    • Nils Peder Willassen1
    • Ola Tarkowska1
    • Paul Yorke1
    • Rebecca Campos1
    • Rob Finn1
    • Siyu Chen1
    • Sujai Kumar1
    • Teresa Müller1
    • Varsha Kale1
    • Willem de Koning1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann19
    • Bérénice Batut18
    • Helena Rasche15
    • Björn Grüning10
    • Paul Zierep7
    • Cristóbal Gallardo6
    • Deepti Varshney5
    • Teresa Müller4
    • Engy Nasr3
    • Nicola Soranzo3
    • Subina Mehta3
    • William Durand3
    • Alex Mitchell2
    • Mallory Freeberg2
    • Melanie Föll2
    • Niall Beard2
    • Willem de Koning2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Bethan Manley1
    • Clea Siguret1
    • Erik Hjerde1
    • Espen Aberg1
    • Espen Mikal Robertsen1
    • Gildas Le Corguillé1
    • Guillermo Rangel Pineros1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Lorna Richardson1
    • Manimozhiyan Arumugam1
    • Matthias Bernt1
    • Nate Coraor1
    • Nikos Pechlivanis1
    • Nils Peder Willassen1
    • Nuwan Goonasekera1
    • Ola Tarkowska1
    • Polina Polunina1
    • Rebecca Campos1
    • Rob Finn1
    • Siyu Chen1
    • Sophia Hampe1
    • Sujai Kumar1
    • Tarnima Omara1
    • Varsha Kale1
    • Wolfgang Maier1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning23
    • Recorded webinar4
    • Tutorial2
    • slides2
    • Slides1
    • Training materials1
    • Webinar1
    • course materials1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets19
    • Associated Workflows18
    • Quarto/RMarkdown Notebook3
    • ARROWSMITH1
    • Show N_FILTERS more
    • Node
    • EMBL-EBI11
    • Denmark1
    • Norway1
    • Slovenia1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Shotgun metagenomics

37 materials found
  • Tutorial

    Metagenomics Bioinformatics

    ELIXIR node event
    Metagenomics MGnify Sequence Analysis Microbiology
  • Webinar

    EBI Metagenomics: analysing and exploring metagenomics data

    ELIXIR node event
    Metagenomics MGnify Sequence Analysis Microbiology
  • course materials, Training materials, Slides

    Hands-on workshop in Marine Metagenomics

    ELIXIR node event
    Genomics Metagenomics Marine biology Marine Metagenomics eLearning EeLP
  • Text-mining exercises

    ELIXIR node event
    •• intermediate
    Microbial ecology Metagenomics Natural language processing Data mining
  • Metagenomics 2015

    Metagenomics
  • TGAC Metagenomics: From bench to data analysis

    Metagenomics
  • EBI Metagenomics portal: Quick tour

    ELIXIR node event
    Metagenomics DNA RNA
  • 1
  • 2
  • 3
  • 4
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.