Training materials
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Clinical Metaproteomics 4: Quantitation
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free -
e-learning
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
e-learning
Clinical Metaproteomics 2: Discovery
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Library Generation for DIA Analysis
•• intermediateProteomics DIA -
e-learning
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
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