Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Bayesian methods1
    • Biostatistics1
    • DNA variation1
    • Descriptive statistics1
    • Gaussian processes1
    • Genetic variation1
    • Genomic variation1
    • Inferential statistics1
    • Markov processes1
    • MicroRNA sequencing1
    • Multivariate statistics1
    • Mutation1
    • Polymorphism1
    • Probabilistic graphical model1
    • Probability1
    • RNA sequencing1
    • RNA-Seq1
    • RNA-Seq analysis1
    • Small RNA sequencing1
    • Small RNA-Seq1
    • Small-Seq1
    • Somatic mutations1
    • Statistics1
    • Statistics and probability1
    • Transcriptome profiling1
    • WTSS1
    • Whole transcriptome shotgun sequencing1
    • miRNA-seq1
    • Show N_FILTERS more
    • Tool
    • Bioconductor
    • Galaxy324
    • FastQC32
    • SAMtools27
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • SCANPY14
    • JBrowse13
    • BLAST12
    • DeepTools12
    • QUAST10
    • STAR10
    • ggplot210
    • BUSCO9
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • gffread5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • HUMAnN24
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • Show N_FILTERS more
    • Content provider
    • Bioconductor23
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Intro7
    • Big data3
    • introduction2
    • Data Representation1
    • GSEA1
    • Introduction to Galaxy Analyses1
    • Using Galaxy and Managing your Data1
    • Variant Analysis1
    • Workflows1
    • Workshop1
    • collections1
    • covid191
    • one-health1
    • virology1
    • Show N_FILTERS more
    • Difficulty level
    • Not specified23
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • License Not Specified23
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Martin Morgan14
    • Anton Nekrutenko3
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Daniel van Twisk1
    • Hervé Pagès1
    • Stephanie Hicks1
    • Aaron Lun1
    • Lori Shepherd1
    • Michael Love et al.1
    • Nan Xiao1
    • Sonali Arora1
    • Wolfgang Huber1
    • Show N_FILTERS more
    • Contributor
    • Anton Nekrutenko3
    • Björn Grüning3
    • Helena Rasche3
    • Nicola Soranzo3
    • Saskia Hiltemann3
    • Bérénice Batut2
    • Niall Beard2
    • William Durand2
    • Armin Dadras1
    • Beatriz Serrano-Solano1
    • Dave Clements1
    • John Davis1
    • Maria Doyle1
    • Mehmet Tekman1
    • Mélanie Petera1
    • Teresa Müller1
    • TheKharleeci1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • Talk5
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Bioconductor or lofreq

26 materials found
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    Using dataset collections

    •• intermediate
    Using Galaxy and Managing your Data collections
  • e-learning

    NGS data logistics

    • beginner
    Introduction to Galaxy Analyses
  • Liftr & sbgr

    Workflows
  • Talk

    Discussion: Guidelines for submitting data to ExperimentHub

  • Talk

    HCA Data Access

  • Talk

    Single cell updates

  • Talk

    Pitfalls and best practices for serializing Bioconductor objects

  • Talk

    Introduction to DataFrames and the impact of recent changes

  • Evening session: Efficient R

    Big data
  • 1
  • 2
  • 3
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.