Training materials
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e-learning
Neoantigen 3: PepQuery2 Verification
• beginnerProteomics label-free -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
e-learning
Peptide and Protein ID using OpenMS tools
••• advancedProteomics DDA HeLa -
e-learning
DIA Analysis using OpenSwathWorkflow
•• intermediateProteomics DIA -
e-learning
Clinical Metaproteomics 2: Discovery
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
EncyclopeDIA
• beginnerProteomics DIA -
e-learning
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
•• intermediateMetabolomics