Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly3
    • Biodiversity3
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Personal genomics3
    • Sequence assembly3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • Show N_FILTERS more
    • Tool
    • DropletUtils
    • GenomeScope 2.0
    • Galaxy325
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • JBrowse14
    • SCANPY14
    • BLAST12
    • DeepTools12
    • STAR11
    • BUSCO10
    • QUAST10
    • ggplot210
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • BamTools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • gffread6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • FastTree3
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training6
    • Show N_FILTERS more
    • Keyword
    • Assembly3
    • Single Cell3
    • biodiversity3
    • assembly2
    • plants2
    • 10x1
    • MIGHTS1
    • QC1
    • VGP1
    • animals1
    • data import1
    • data management1
    • eukaryote1
    • genome1
    • nanopore1
    • pacbio1
    • paper-replication1
    • polishing1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner5
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International6
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Show N_FILTERS more
    • Author
    • Anna Syme2
    • Cristóbal Gallardo2
    • Delphine Lariviere2
    • Wendi Bacon2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Brandon Pickett1
    • Daniel Blankenberg1
    • Fabian Recktenwald1
    • Giulio Formenti1
    • Hans-Rudolf Hotz1
    • Jonathan Manning1
    • Julia Jakiela1
    • Linelle Abueg1
    • Marcella Sozzoni1
    • Mehmet Tekman1
    • Morgan Howells1
    • Pavankumar Videm1
    • Tom Brown1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann6
    • Björn Grüning5
    • Helena Rasche5
    • Bérénice Batut4
    • Cristóbal Gallardo4
    • Mehmet Tekman3
    • Pavankumar Videm3
    • Wendi Bacon3
    • Anna Syme2
    • Deepti Varshney2
    • Delphine Lariviere2
    • Julia Jakiela2
    • Teresa Müller2
    • Anton Nekrutenko1
    • Beatriz Serrano-Solano1
    • David López1
    • Donny Vrins1
    • Hans-Rudolf Hotz1
    • Jonathan Manning1
    • Linelle Abueg1
    • Marisa Loach1
    • Marius van den Beek1
    • Pablo Moreno1
    • Saim Momin1
    • Tom Brown1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows6
    • Associated Training Datasets5
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: GenomeScope 2.0 or DropletUtils

6 materials found
  • e-learning

    Converting between common single cell data formats

    • beginner
    Single Cell data import data management
  • e-learning

    Generating a single cell matrix using Alevin

    • beginner
    MIGHTS Single Cell paper-replication
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • beginner
    10x Single Cell
  • e-learning

    Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

    •• intermediate
    Sequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio
  • e-learning

    Large genome assembly and polishing

    • beginner
    Sequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing
  • e-learning

    ERGA post-assembly QC

    • beginner
    Sequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.