Training materials
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e-learning
RNA-Seq data analysis, clustering and visualisation tutorial
• beginnerTranscriptomics PCA bulk clustering collections mouse rna-seq work-in-progress -
e-learning
Single Cell Publication - Data Plotting
••• advancedContributing to the Galaxy Training Material R jupyter-notebook rmarkdown-notebook -
e-learning
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
e-learning
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
e-learning
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq
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