Training materials
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e-learning
Single Cell Publication - Data Plotting
••• advancedContributing to the Galaxy Training Material R jupyter-notebook rmarkdown-notebook -
e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
e-learning
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
e-learning
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly biodiversity covid19
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